Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01128 ATGGGTTACGATTCGGATAGCCCCTCGCAAGATGGGAGGGACGAAGACGACGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTTGGGTTCATGTTTGGAAATGTTGATAATTCTGGTGATCTCGATGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTAGCTGATAAGCTGGGTCCGTCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGACGTTGTTGAACAAGGCTGTGACGTAAAAGCTGAAGACGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAAGCTGCCAATGAAGAAGACTATTTATTGCCAAAAAAAGAATTTTTCTCTGCTGAAGCCTCTGTATGTTTGGAATCCAAAGCTTCTGTCTTTGATGATGAAAATTATGATGAAGATTCTGAAAAGGAGCAAGACTTTGTGAATGACGATTGTAAAGTTGATAACATCCCTTTAGCTGGGGAGCAGAAAGAGAGTTTTGTGGATGCATCTAAAGAAGAGAGTTCACTTGAACATGAATTACATGTTGACTCACCGCAGACTGAAGAATTGGATGCTGATGTACAAAAGCTTGAGGAGGAAAGCCCTGAAGTTCCGAAAAGGTCTATGGCTATGCCATTGCCTGTTTTATGTGTGGAAGATGGTGTGACAATTTTACGTTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAGCATCGACATTCTATTCCTAGAGATAGATACAAGTCTTTGGATTTAATTGATGATTTTATAGAAGAGGATGAAGAGGAATTCCTCAAGGGCTTCTCCCAGAGTCTCTCACTTACTAAACAGGTTTGTGTAGTTCATAATGATGTATCAGAAAGCAATGATGTTGACTTGGAGTTTCCAAAATTTGGATTTCTTCTTGCGGATGCCTCAGTGGCCAGGAAAGATGATCATCAATCAAAGGACTCATGCCATAGTGCTGAACCGATGAAAGGGGATTTTGCAGAAGATCATTCACGGAAAGATCATCCTTTCATGTTGGCCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCCTTTGGGGCAATTCTCCAGTTCCAAGTAATAATAATGTTGAAAGCTGTGAAATTTCTGGACCTGAGTTGGGAGCTTCTGGTGGCAGTGAAATAGAAATAGAAAGTGGGATCCAGAGTATTCAGATGGAGCCTCAGAAGAAACTGGAGGATAAAGATCATAATGTCTTAATGTGCAGCTCTCCTGTCAAAGTGGAGCCCTTTGGCTCATGGGATTCTTTTGGAGCTAAGACCAATTTAATATCCAGAAGTCTATTTCACCCCCAACTTCTAAGGCTAGAATCCAGATCTGAAGTGGATAGTTCTAGTCTTGCAGATGGAAGAGAGGCGGAGATATCAGAGCATAATCAAAGTGGTCAAGTAAAGCGTTTTACCAAGGTTATATCACAAAACAGAGACATGATGGAGGGCTCCTGGTTAGACAAGATAATATGGGAGGAGCTTGATCAGCCTATGGTGAAACCAAAGCTTATTTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTAGATAGCAAGGATGGTACACATCTTCGCCTTCATGCTGGGGCTATGATTTTAACTCGTTCTTTACAATCAATCAGCGGGGATTCTTCTGAGCTACCAGGGCATGGAAGTCAATATGGATGGCGACATGTTGCTAATGACAAACACTATTCAAACCGTAAAACTTCTCAGCAGCTGAAATCAAATTCCAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCACTGAAGCTGCAGACAATGAAATTGAAATTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATAAAGAGTTTGGGTGGCAAGGGGAGTAAATTGCATGTCGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGTATCAGAAACAGTGAAAATATTTTACTTAGGAAGGGAGCTTGAAGATCACAAGTCACTTGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCAAAAGCACAAAGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAGTCTGATCTGTCAGTAAAAGATGGACATGTTTTTCTGATGGAGCATTGTGAAGAAAGGCCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCAGATGACCAATCTGGCTCCTTATTACGCAACACAGATAATAGCTTGGGGCACATTATTTCCCTGGATCCTGCTGATAAATCTCCTTTCCTTGGAGATTTAAAACCTGGTTGCACTCAGTCATCACTTGAGACAAATATGTATAGAGCACCCGTATTTCCTCATAAAGTTCCATTAACTGACTACCTGCTGGTTCGTTCATCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTCGGACAGCAGGAGCCTCTCATGGAGGTATTATCACCTGGAAGTAAAAATCTTCAGAATTACATGATAAACAGGCTATTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCATATGCCTCCGTATATCCGTGTTGATGAGTTTCTCTCACAGTTTCCTTACCAGTCAGAAGCGTCATTCCGTAAGAAAATCAAGGAATATGCCAATTTGCAGAGGGGAACAAATGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATTTGGTCAGAGGATGAATTGAGAAAAATGGTTACACCAGAGCTTGTTTGTGCTTACGAAAGCATGCAAGCTGGCCTCTACCGTCTAAAACATTTAGGAATAACTGAAACACACCCCACTAATATTTCATCTGCAATGAGTCGTCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGCATGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCAAGTGCAATGGTGAAAAAGAAAGCAGCTGCTAACCGTGGAGGTTCTACTGTTACCGGTACAGATGCTGATCTACGTAGATTAAGCATGGATGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGACGAAGTCATTGCAAAACAAACTAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCAACATCTGGGGTTAAGGTTGATCCAACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAATGCCAGGAGATTTGGGATCGACAAGTTCAAAGTCTGTCAGCTGTAAATGGTGATGAAAATGAGAGCGATTTAGAAGGGAATAGTGATCTAGATTCTTTCGCGGGAGATCTTGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGAGTACCAATGACTTAAAACGTGATAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACACCCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGACGCAGCTGAGGCTGCTGAATTATGCAGGCTGCTTATGGATGATGATGAAGCTGACAAGAAGAAAAAGAAGAAAGCTAAAGTTATTGTGGGAGAAGCTAGATTGGTACCAAAGATGCAATCCAAATTTTCCTTTGACAATGCTGAACAAGTTAAGCAAATAACAAATACTTTACAATTAGATGGAACTAATCACTGGAAAGAGGATGCAATCACAGATCTTAGGGAGGAGGAAAACTTTCCCACTAAAAAAAGCAAATCACTGAAGGTCAATAAAGTCAAGAAGAATGATATTACACCTATTAGTATACCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTAAGGCTGGGCACATGAGAACGAATAAGAACTGTCCAAAATATGGTGAAGATCTAGAAACTCAACTTGAATCTACAGACATGGAAAAATCATCTGGAAAATCCAGCTTTGTGGATCCCTCTAGTCTTTCCCAGCATAAAGCTCCCTCCAAAAAGTCAATGTCTAAAGGCACAACAAAAATTGCTCCTGTTGACAATTCATCAAAAATTCCATTGAAATTCAAATGCAGCTCCACAGAGAAATCTTCTGATAAACCTGCAATAGAAAGCCTGCAGAGTTCTGACAAGCCAGTCACTTCTGACTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAGAAAGTGAAACCAGATGATACACAGGCTGAATCTGGTAAGCATGCTATTGTTATACGGCCTCCTACTGATTCAGGTAGAGGACAGGTTGATTCTCATAAGTTCCCTATTAAAATACGCCCGCCAACAGAAATAGATAGGGAGCAAAACCACAAAAAGATTGTTATAAAACGTACAAAGGAAGTTATTGATCTGGAACTGGACAGTCCTGGTGGAAACACTGGACTTCAACACAGAAAAACTAAAAGAATTGTTGAATTGTCGAATTTCGAGAAACAAAAGAAACAGGAGACCGTGTATGGAACTGAAGGTTTTAAAAAATGGAACAGTAAAGAGGACAGAAGATGGCAGGAAGAGCAAGAGAAATGGAGAAATGATGCAAGGCTTCGAGAAGAAGACAGAGCAAGAAGGCATCGCAAAGAAGAAATCAGGATGCTCAAAGAGCAAGAAAGGTTAGATGAGATAAAAAGATTTGAAGAAGATATTAGAAGAGAAAGGGAGGAGGAAGAACAACAAAAAGCTAAGAAGAAGAAGAAGAAGAAGCCTGAGTTAAGAGACGAGTATTTAGATGACCTCAGAGCAAGAAGACACGATAAGAGAATGCCAGAAAGAGACCGGAGTGGAAAAAGGAGATCTATTACTGAGTTAGGAAAGATTGGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGCGTTGTGGACACCATTGTGAAAGATAGGTATGATCTGTCGTATCTTTTCTTGAAACCGGTGTCGAAGAAAGAGGCTCCTGACTACCTGGACATTATAGAGAGACCTATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAATATGGAGTACAAGAGCCGAGAAGATTTCAGGCACGACATGTGGCAGATTACTTTTAATGCACATAAATATAACGACGGGCGAAATCCGGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGACGATAGCCTCACTGAAGCAGAAACTGGCATTGAAATTAGAGATTTCTAA 5670 0.4088 MGYDSDSPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQGCDVKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSAEASVCLESKASVFDDENYDEDSEKEQDFVNDDCKVDNIPLAGEQKESFVDASKEESSLEHELHVDSPQTEELDADVQKLEEESPEVPKRSMAMPLPVLCVEDGVTILRFSEIFGIHEPLRKGEKREHRHSIPRDRYKSLDLIDDFIEEDEEEFLKGFSQSLSLTKQVCVVHNDVSESNDVDLEFPKFGFLLADASVARKDDHQSKDSCHSAEPMKGDFAEDHSRKDHPFMLANFYPLDQQDWEDEILWGNSPVPSNNNVESCEISGPELGASGGSEIEIESGIQSIQMEPQKKLEDKDHNVLMCSSPVKVEPFGSWDSFGAKTNLISRSLFHPQLLRLESRSEVDSSSLADGREAEISEHNQSGQVKRFTKVISQNRDMMEGSWLDKIIWEELDQPMVKPKLIFDLQDDQMHFEVLDSKDGTHLRLHAGAMILTRSLQSISGDSSELPGHGSQYGWRHVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKVSETVKIFYLGRELEDHKSLAAQNVQPNSLLHLVRTKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEHCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDNSLGHIISLDPADKSPFLGDLKPGCTQSSLETNMYRAPVFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQNYMINRLLVHMCREFQAAEKRHMPPYIRVDEFLSQFPYQSEASFRKKIKEYANLQRGTNGQSILVKKRNFRIWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMDAAREVLLKFNVPDEVIAKQTRWHRIAMIRKLSSEQATSGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDLEGNSDLDSFAGDLENLLDAEECEEGEESTNDLKRDKGDGVKGLKMRRHPTLAQAEEEIEDDAAEAAELCRLLMDDDEADKKKKKKAKVIVGEARLVPKMQSKFSFDNAEQVKQITNTLQLDGTNHWKEDAITDLREEENFPTKKSKSLKVNKVKKNDITPISIPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESTDMEKSSGKSSFVDPSSLSQHKAPSKKSMSKGTTKIAPVDNSSKIPLKFKCSSTEKSSDKPAIESLQSSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESGKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQNHKKIVIKRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETVYGTEGFKKWNSKEDRRWQEEQEKWRNDARLREEDRARRHRKEEIRMLKEQERLDEIKRFEEDIRREREEEEQQKAKKKKKKKPELRDEYLDDLRARRHDKRMPERDRSGKRRSITELGKIGADYMPPTKRRRGGGGEVGLANILESVVDTIVKDRYDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDMWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTEAETGIEIRDF 1889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01128 1889 CDD Ubl_TAFs_like 669 740 - -
Gma04g01128 1889 Pfam Ubiquitin family 671 741 IPR000626 GO:0005515
Gma04g01128 1889 ProSitePatterns Bromodomain signature. 1790 1847 IPR018359 -
Gma04g01128 1889 CDD Bromodomain 1774 1870 - -
Gma04g01128 1889 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Gma04g01128 1889 Pfam Bromodomain 1776 1851 IPR001487 GO:0005515
Gma04g01128 1889 PRINTS Bromodomain signature 1788 1801 IPR001487 GO:0005515
Gma04g01128 1889 PRINTS Bromodomain signature 1802 1818 IPR001487 GO:0005515
Gma04g01128 1889 PRINTS Bromodomain signature 1818 1836 IPR001487 GO:0005515
Gma04g01128 1889 PRINTS Bromodomain signature 1836 1855 IPR001487 GO:0005515
Gma04g01128 1889 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1398 1884 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Gma04g01128 1889 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 15 1299 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Gma04g01128 1889 Gene3D - 22 68 IPR036741 -
Gma04g01128 1889 MobiDBLite consensus disorder prediction 1696 1743 - -
Gma04g01128 1889 Gene3D - 651 741 - -
Gma04g01128 1889 MobiDBLite consensus disorder prediction 169 201 - -
Gma04g01128 1889 ProSiteProfiles Bromodomain profile. 1785 1855 IPR001487 GO:0005515
Gma04g01128 1889 MobiDBLite consensus disorder prediction 1436 1584 - -
Gma04g01128 1889 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Gma04g01128 1889 SUPERFAMILY Bromodomain 1756 1877 IPR036427 GO:0005515
Gma04g01128 1889 MobiDBLite consensus disorder prediction 595 614 - -
Gma04g01128 1889 MobiDBLite consensus disorder prediction 1444 1523 - -
Gma04g01128 1889 MobiDBLite consensus disorder prediction 1241 1261 - -
Gma04g01128 1889 PANTHER BNAA01G26290D PROTEIN 15 1299 - -
Gma04g01128 1889 PANTHER BNAA01G26290D PROTEIN 1398 1884 - -
Gma04g01128 1889 MobiDBLite consensus disorder prediction 1 30 - -
Gma04g01128 1889 MobiDBLite consensus disorder prediction 1642 1669 - -
Gma04g01128 1889 MobiDBLite consensus disorder prediction 1247 1261 - -
Gma04g01128 1889 SMART bromo_6 1764 1875 IPR001487 GO:0005515
Gma04g01128 1889 MobiDBLite consensus disorder prediction 1563 1584 - -
Gma04g01128 1889 Gene3D - 1686 1887 IPR036427 GO:0005515
Gma04g01128 1889 SMART ubq_7 669 741 IPR000626 GO:0005515
Gma04g01128 1889 MobiDBLite consensus disorder prediction 1531 1545 - -
Gma04g01128 1889 MobiDBLite consensus disorder prediction 67 86 - -
Gma04g01128 1889 Pfam Protein of unknown function (DUF3591) 588 1155 IPR022591 -
Gma04g01128 1889 MobiDBLite consensus disorder prediction 176 201 - -
Gma04g01128 1889 Coils Coil 1680 1719 - -
Gma04g01128 1889 Coils Coil 1271 1291 - -
Gma04g01128 1889 SUPERFAMILY Ubiquitin-like 639 739 IPR029071 -
Gma04g01128 1889 ProSiteProfiles Ubiquitin domain profile. 669 739 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01128 Gma-Chr4 15676621 15718352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01128 669 739 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 1.52e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01128 K03125 - gmx:100783866 3548.83