Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01108 ATGTCCACGGCGGCTCTGCCACCCTCCGCCCCCACCGCCACAGCTGGCGGGGGCCTCGGCTACGGCATTGCCATCGCCGTGAGCATCCTGGTCCTGATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGTATCAAAGCCAACGGCAGCATCATCACTCGCCGCCACAACCACAACATCAACACTCACCAAAGAAACAACAACAATAATAACAGCAGTTTTCGTGACGCGTCGGATGGGCCTGGTGTTGTGGTCCTGGGCTTGGAGAAGCCCGCCATCGAGGCCTGCTACGGGCCCAAGATCGTGATCGGAGAGAGCAAGCGCCTGCCCAGGCCCAACGACCAGGGCCCGTGCGCGATTTGCTTGAGCGAGTATCTTCCCAAGGAGACGATACGGTGCGTTCCGGAGTGCCGCCACTGCTTCCACGCGGAGTGCGTCGACGAGTGGCTCAAGACGAGCGCCACGTGTCCCCTCTGCCGGAACTCCCCCGCGCCCTCGCCGCTGCCCGCGGCGGCCGCCACGCCGCTGTCGGAGATTGTTCCTCTGGCTTTCCACGCCAGGTGA 567 0.6402 MSTAALPPSAPTATAGGGLGYGIAIAVSILVLISTIMLASYACVRIKANGSIITRRHNHNINTHQRNNNNNNSSFRDASDGPGVVVLGLEKPAIEACYGPKIVIGESKRLPRPNDQGPCAICLSEYLPKETIRCVPECRHCFHAECVDEWLKTSATCPLCRNSPAPSPLPAAAATPLSEIVPLAFHAR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01108 188 CDD RING-H2_EL5_like 119 161 - -
Gma04g01108 188 SMART ring_2 119 160 IPR001841 -
Gma04g01108 188 SUPERFAMILY RING/U-box 113 164 - -
Gma04g01108 188 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 167 - -
Gma04g01108 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 167 IPR013083 -
Gma04g01108 188 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 20 167 - -
Gma04g01108 188 Pfam Ring finger domain 119 161 IPR001841 -
Gma04g01108 188 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01108 Gma-Chr4 15197178 15197744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01108 6 188 C3H Transcription Factor Family AT5G07040 54.645 1.14e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01108 - - gmx:100803286 301.597