Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01088 ATGGACCTGAAGCCAAATCTTAACCCTGTCCTTACTGATGCCACACCCTTAACAAGGTCAAGGCTGGGTGTGCCTTCTGGTTTATCACCTTACTCTCCTATAGGGGCAACCTTTCCCCATGGTAACATGCTGGCAATTCCAAGGAAGAAGACAGGAATTCTTGACGATTTTCGTTCTAGCGGTTGGCTCGATGCAATGAAATCGTCTTCTCCTACTCACACTAAGGTATCCAAGGATGTTAGTCATGGGATTGGATCACCTGATTCTGCTTATAGTACCTGGCTGCTAAAGTTTCCATCAGCACTAGCATCTTTTGATCAAATTACCAACTGTGCAAAAGGGAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGATAATCCTGACTCTGCTTTCATGTCAGACAATATGCGTGCTGCTGTTAAAATAGTGGCGGAATATTTTCCAACCGCGATAATTAGTGGAAGAAGCCGTGACAAGGTATATGAATTTGTTGGAGTAAGTGATCTATGTTATGCTGGTAGTCATGGTATGGACATTATTGGTCCTTCTAGACAATCTATTTCTGATAATCACCCTGATTGCATTAGTTCTGCTGACAAGCAGGTACTAGTTTTAAAGTTTCAAACATATTTTTATGCTGATCAACTAATGTTTCAACAGGTACTTGGGTTGCTCATGGAGTGCACAGAAGATATTGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAGATGAGGAGAGTTGGCAAATTGTGGGACAACGTGTATATGATGTTCTGAAGGAGTATCCACGTTTGCGTTTAACTCATGGGCGGAAGGTAGTTTTAGAGGTTCGGCCAGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTACTCGAGTCACTTGGACTTAATTGTGATGACGTGCTCGCTATTTATGTTGGGGATGATAGAACAGATGAAGATGCATTTAAGGTTTTGAAAGAAGCTAATAAAGGTTGTGGCATCTTAGTGTCCCGTGCCCCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCCTCTGAGGTCATGGAATTTCTGACATCACTTGCGGAATGGAAATCAAGCATTCAAGCTCGCTGA 1152 0.421 MDLKPNLNPVLTDATPLTRSRLGVPSGLSPYSPIGATFPHGNMLAIPRKKTGILDDFRSSGWLDAMKSSSPTHTKVSKDVSHGIGSPDSAYSTWLLKFPSALASFDQITNCAKGKRIALFLDYDGTLSPIVDNPDSAFMSDNMRAAVKIVAEYFPTAIISGRSRDKVYEFVGVSDLCYAGSHGMDIIGPSRQSISDNHPDCISSADKQVLVLKFQTYFYADQLMFQQVLGLLMECTEDIEGATVENNKFCVSVHYRNVDEESWQIVGQRVYDVLKEYPRLRLTHGRKVVLEVRPVIDWDKGKAVTFLLESLGLNCDDVLAIYVGDDRTDEDAFKVLKEANKGCGILVSRAPKESNAIYSLRDPSEVMEFLTSLAEWKSSIQAR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01088 383 SUPERFAMILY HAD-like 118 376 IPR036412 -
Gma04g01088 383 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 383 IPR044651 GO:0004805|GO:0005992
Gma04g01088 383 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 383 - -
Gma04g01088 383 Pfam Trehalose-phosphatase 120 364 IPR003337 GO:0003824|GO:0005992
Gma04g01088 383 CDD HAD_TPP 118 368 - -
Gma04g01088 383 TIGRFAM T6PP: trehalose-phosphatase 114 374 IPR003337 GO:0003824|GO:0005992
Gma04g01088 383 Gene3D - 230 383 IPR023214 -
Gma04g01088 383 Gene3D - 117 226 IPR023214 -
Gma04g01088 383 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 119 338 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01088 Gma-Chr4 14319676 14322414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01088 113 375 Trehalose Biosynthesis Gene Families AT1G70290 25.714 1.16e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01088 K01087 - gmx:100799726 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01088 04 14319676 14322414 Gma06g02828 06 52104149 52107100 GST