Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01084 ATGGAGCAATCAGTGAATGCCCAAATTCACATCACGTGGTTGGGCTCAAAATGTAGAAGCAAGCAAGAAAAAGCAGCATGGTCAGATTGCGTAACCCTCTACCAAGACACCATCAACATTCTCAACCAAGCACTTAACCCTACCAAACAAAGCACTAGCTATGATCTCCAAACATGGCTTACCACATCCTTAACCAACACTGACACGTGCCAAACCGGATTCCACAAGGTTGGTGTTGGCAACAATGTTCTACCTCTCATTCCCAACAAGAATATCTCGAAGATCATAAGCGACTTTTTGACTCTTAACAATGCTTCCTCATTTATTCCTCCAAAGACTAACAAAAATGGCTTCCCCAGATGGTTATCACCAAATGATAGGAAGCTTCTAGAGGATTTTAAGACAATCAAAGAAGCTTTGAAAGCAGTCCCCAAGTTGAGTCCAAAGAGGTTTGTGATATATGTTAAACATAGTGTTTACAATGAAAACATTGAATATTATGTTGTATGCCGAAGTGTTGGAGGAGGTTCTACCACTTTTAATTCAACGAACGTTGATGGGTTCATTGCACGTGGCATCACATTCCGCAACACAGAAGGCCCAGAAAACCACCAAGCAGGAGCACTGCGTTGTGGTGCTGACCTCTCTGTCTTCCATCGCTGTGCATTTGAAGGCTACCAAGACACTCTCTATGTCCACTCCCAAAGACAGTTCTACAAGGAATGCCACATTTTTGGCACAGTGGATTTCATCTTTGGCAATGCCGCTGTCGTCTTCCAATCCTGCAATATATACGCAACAAGGTCAATGCAGAAACAGAAAAATGCCATAGCAGCAGAAGATCCTAATCAAAACACTGGGATTTGCATTCAAAACTCGCGTGTTATGGCTGTTGAAGACCTAGTCCCTGTGCTGAGTTCCTTCAAAACCTTCTTGGGTAGGCCATGGAGGGAGTATTCAAGGACCGTGTTCTTGCAAACTTACCTTGATGCGTTGGTAGACCTTGCAGGAGAAAACCCTAGAAATCAAACCCTCTCTCGCACCGCCATCTGCCTCCATAACGATAACACTGTGCTTGCTACAATCATGGCGAACGTCATGGTAATGAAGGAGATCGAGGACACGGCACTGCGTCTCGGCGTCGATCTCTCCACTCTCGATCTCGATGCCATTCGCATCCCTCCCGATGAAGATTGCAGCATCGTTAGTGATGCTGAGGTGGTTTACCAAGAGGAGAATCTCGAGTTTGAGTGTTGTTAG 1260 0.45 MEQSVNAQIHITWLGSKCRSKQEKAAWSDCVTLYQDTINILNQALNPTKQSTSYDLQTWLTTSLTNTDTCQTGFHKVGVGNNVLPLIPNKNISKIISDFLTLNNASSFIPPKTNKNGFPRWLSPNDRKLLEDFKTIKEALKAVPKLSPKRFVIYVKHSVYNENIEYYVVCRSVGGGSTTFNSTNVDGFIARGITFRNTEGPENHQAGALRCGADLSVFHRCAFEGYQDTLYVHSQRQFYKECHIFGTVDFIFGNAAVVFQSCNIYATRSMQKQKNAIAAEDPNQNTGICIQNSRVMAVEDLVPVLSSFKTFLGRPWREYSRTVFLQTYLDALVDLAGENPRNQTLSRTAICLHNDNTVLATIMANVMVMKEIEDTALRLGVDLSTLDLDAIRIPPDEDCSIVSDAEVVYQEENLEFECC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01084 419 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 87 IPR006501 GO:0004857
Gma04g01084 419 Gene3D - 126 358 IPR012334 -
Gma04g01084 419 PANTHER PECTINESTERASE 1 337 - -
Gma04g01084 419 SUPERFAMILY Pectin lyase-like 131 342 IPR011050 -
Gma04g01084 419 Pfam Pectinesterase 132 165 IPR000070 GO:0030599|GO:0042545
Gma04g01084 419 Pfam Pectinesterase 174 344 IPR000070 GO:0030599|GO:0042545
Gma04g01084 419 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 105 IPR035513 -
Gma04g01084 419 PANTHER PECTINESTERASE 1 337 - -
Gma04g01084 419 CDD PMEI-like_3 1 105 - -
Gma04g01084 419 Pfam Plant invertase/pectin methylesterase inhibitor 5 81 IPR006501 GO:0004857
Gma04g01084 419 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 104 IPR035513 -
Gma04g01084 419 ProSitePatterns Pectinesterase signature 2. 244 253 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01084 Gma-Chr4 14019603 14027140 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01084 1 337 Carbohydrate Esterase AT2G45220 51.194 7.58e-125 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01084 K01051 - gmx:100776412 550.436