Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01068 atgctcAGTCTCGCAAACCCACCCTCGTCACTGCCATTGTCCCTGACCCCCCACGCTCAGTCTCGCAAAGCCACCCTTAGGTCGTCGCCGCGCTCTGGTTGTGTCTGCTATGATGCTCATCGCCGTGTCCTGGTAAGTTTTCTTGCTTCGGAAAAATTCATGTCGTCACTGCCATTGTCTTTGAATGACGTTCGTTGCTTTCCTTGCAGCCATTTCATTGGCACCAAAGCACTCTTTGCTCTTCTTTGTACTCGCAATCACAGGGAAAGTTGTACTTTGACTGTTTCAAGCTTTAGATACCCTGAGACTAGGCTCAGGCCCTTTGATTTACACTATATCAGAGAACAACCAAGTAAGCCTGCAACCCCAGTTACACCGCCACCATCAGTAGAACTTAAGCCACAACCAGTCTTTGCTCCTTCACCAAAGGACTACGTGAATGGCTTCCCATGGCCACCAAGATCATACACTTGCAGCTTTTGTAGAAAGGAGTTTAAGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGACCAAGGTTGAGGCAGTCATCACCCTCAATTCATGAAGTTCAAGGTCAAGCTGCTGGACCTATAAGGCACAACCTTAATCTTGACCCTAACAACAACTCAGCCTCATCATGA 657 0.4764 MLSLANPPSSLPLSLTPHAQSRKATLRSSPRSGCVCYDAHRRVLVSFLASEKFMSSLPLSLNDVRCFPCSHFIGTKALFALLCTRNHRESCTLTVSSFRYPETRLRPFDLHYIREQPSKPATPVTPPPSVELKPQPVFAPSPKDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRPRLRQSSPSIHEVQGQAAGPIRHNLNLDPNNNSASS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01068 218 Gene3D Classic Zinc Finger 153 201 - -
Gma04g01068 218 MobiDBLite consensus disorder prediction 173 218 - -
Gma04g01068 218 SUPERFAMILY beta-beta-alpha zinc fingers 153 184 IPR036236 -
Gma04g01068 218 Pfam C2H2-type zinc finger 156 180 - -
Gma04g01068 218 PANTHER OS07G0101800 PROTEIN 144 218 - -
Gma04g01068 218 SMART c2h2final6 156 178 IPR013087 -
Gma04g01068 218 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Gma04g01068 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Gma04g01068 218 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 144 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01068 Gma-Chr4 13191161 13194364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01068 144 186 C2H2 Transcription Factor Family AT3G23130 83.721 7.88e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma04g01068 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01068 - - gmx:100781722 151.369