Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma04g01056 | ATGGCTTCTTCATCGAGTAGCGGATTGACGTTCAAGCTGCACCCTCTGGTGATCGTAAACATCTCGGACCACTACACCAGGGTCAAGTCTCAGATGAACCCAACCCACGCGCCACCGCACAACAACAACAACGCCAACGGCGGCGACGGCGTCGTTTCGCCGCTCTCCCCGCGGGTCTATGGCTGCGTCATAGGGGTCCAGAAGGGCCGCACCGTGGAGATCTTCAACAGCTTCGAACTCCTCTACGATCCTTCCTCCCACTCCCTCGATCGCACCTTCCTCGAGAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCGCACTTCTATATACTGGGGTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGACATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAATCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTGAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCTATACTATTGAGACTGTTGAAGCAGAACGAATATCAGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCTGCTACACAATTGGCTGCTCACCTTACTGGAATACACAGTGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACATCACTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGCGAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGCAAATTTCAAGATGATTTCTTGATGGAGTACAATGACACCTTATTGATTAGTTACCTGGCAATGCTGACCAACTGCTCAAGTGCTATGAATGAACTGGTGGACAAATTTAATATTGCGTATGATAGGCATAGCAGAAGGGGTGGACGAACTGCTTTTATGTGA | 957 | 0.4566 | MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTHAPPHNNNNANGGDGVVSPLSPRVYGCVIGVQKGRTVEIFNSFELLYDPSSHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNELVDKFNIAYDRHSRRGGRTAFM | 318 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma04g01056 | 318 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 7 | 137 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Gma04g01056 | 318 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 2 | 318 | - | - | |
Gma04g01056 | 318 | Gene3D | Cytidine Deaminase, domain 2 | 1 | 199 | - | - | |
Gma04g01056 | 318 | Pfam | Maintenance of mitochondrial structure and function | 185 | 299 | IPR024969 | - | |
Gma04g01056 | 318 | PANTHER | COP9 SIGNALOSOME COMPLEX SUBUNIT 6A | 2 | 318 | - | - | |
Gma04g01056 | 318 | SMART | pad1_6 | 10 | 164 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Gma04g01056 | 318 | ProSiteProfiles | MPN domain profile. | 11 | 165 | IPR037518 | - | |
Gma04g01056 | 318 | MobiDBLite | consensus disorder prediction | 30 | 50 | - | - | |
Gma04g01056 | 318 | CDD | MPN_CSN6 | 9 | 314 | IPR033859 | GO:0000338|GO:0008180 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma04g01056 | Gma-Chr4 | 12721009 | 12731578 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma04g01056 | 2 | 269 | Eukaryotic Initiation Factors Gene Family | AT2G39990 | 22.711 | 1.54e-09 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma04g01056 | K12179 | - | gmx:100797079 | 606.675 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma04g01056 | 04 | 12721009 | 12731578 | Gma06g02849 | 06 | 52304649 | 52310561 | GST |