Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01054 ATGAAAAGAGAGAAACCATACCTTATGAAGAAGATGCCATGGTCACCAAGAAGAGAAGCACCGATAGTAGTGAGGTTCGTTGTGATTGCCTTATTCATCATGATAACAGTACCAACACCACCAACAGCAGCAGATGCAGAAGCAGAAGCAGCAACAACAACTTCTGATGCAGTTTTATTGATACAGTTCAAGCATTTACACGTTTCCTCTGATCCCTACAGCTTCCTCTCCGACTGGGACCCACACGCGCCATCCCCGTGCGCGTGGCGAGGTATCACCTGCTCCTCCTCCGGCGGCGTCAGCGCCATCGACCTCAGCGGCGCTGCCCTCTCCGGCACACTGCACCTCCCCACACTCACGTCACTTTCATCGCTCCAAAACCTAATCCTACGTGGCAACTCCTTCTCCTCTTTCAACCTCACCGTTTCGCCAATTTGTACGCTCGAAACACTCGACCTCTCTCACAACAACTTCTCCGGCAAGTTTCCTTTCGCAAACCTCGCTCCATGTATCCGCCTTAGCTATCTCAACCTCTCTAATAATCTCATCACCGCTGGGCCTGGGCCCTGGCCCGAGCTGGCCCAACTTGATTTGTCTAGAAACCGTGTCTCCGACGTGGACCTTCTCGTTTCCGCTCTCGGAAGCTCAACTCTCGTTTTTCTTAACTTCTCGGACAATAAACTCGCGGGTCAACTCAGCGAAACGCTCGTTTCGAAGAGCCTGAATCTCTCCACTTTGGACCTCTCTTATAATCTTTTCTCCGGAAAGGTTCCGCCGAGGCTTCTAAACGACGCCGTTCAGGTCCTGGATTTCTCGTTCAACAATTTCTCGGAATTTGACTTCGGTTTCGGTTCGTGTGAGAATCTAGTTCGGTTGAGTTTCTCGCACAATGCAATCTCTTCAAACGAGTTTCCGCGCGGGTTGGGTAACTGCAACAATCTTGAGGTTCTAGATCTTTCTCACAATGAGCTCATGATGGAGATTCCGTCGGAAATTCTTCTGAATTTGAAGAGTTTGAAGTCTCTGTTTCTCGCACACAACAAATTTTCCGGCGAAATCCCGAGTGAGCTTGGAAGCCTTTGCAAAACTCTAGTTGAACTTGATCTCTCGGAGAACAATCTTTCTGGTTCGTTGCCTTTGAGTTTCACTCAATGTTCTTCTCTGCAGAGTCTGAATCTCGCGAGAAACTATTTTTCTGGGAACTTCCTTGTTTCCGTGGTGAACAAGCTTCGGAGTCTAAAGTATCTAAACGCAGCGTTTAACAACATAACGGGACCGGTTCCGGTGTCGCTTGTGAGCTTGAAAGAGCTTCGGGTTCTTGACCTGAGCTCGAACCGGTTCAGCGGCAATGTTCCGTCGTCTTTATGTCCTTCCGGGTTGGAGAATTTGATCCTCGCTGGCAATTACCTTTCAGGGACGGTACCGTCACAGCTCGGTGAGTGTAGGAACTTGAAAACTATTGATTTCAGCTTTAACAGTTTGAACGGTTCCATACCGTGGAAGGTGTGGGCTTTGCCTAATTTAACTGATTTGATTATGTGGGCTAATAAACTCACTGGAGAAATCCCCGAGGGAATTTGTGTTAAGGGAGGGAACTTGGAGACGTTGATTTTGAACAACAATTTAATTTCTGGGTCCATTCCGAAGTCAATTGCGAATTGCACCAACATGATATGGGTGTCGTTGGCGAGCAACCGGTTAACCGGGGAGATAACGGCTGGGATTGGGAATTTGAATGCATTGGCGATTCTTCAGCTGGGGAATAACTCGCTCAGTGGGAGGATTCCGCCGGAGATAGGCGAGTGCAAGAGGTTGATATGGTTGGATTTGAATAGCAATAACCTAACCGGGGATATCCCTTTCCAGCTTGCTGATCAGGCAGGGTTGGTTATCCCAGGTAGGGTTTCGGGGAAGCAGTTTGCGTTTGTGAGGAATGAGGGTGGGACTAGTTGCAGGGGTGCTGGTGGGTTGGTTGAGTTTGAGGATATCAGGACAGAGAGGCTTGAAGGTTTTCCAATGGTGCATTCATGCCCGTTGACACGGATTTACTCCGGTTGGACTGTGTATACTTTTGCTTCCAATGGGAGTATGATCTACCTTGACCTTTCCTACAACTTGTTGTCTGGTAGCATCCCTGAGAATTTGGGTGAGATGGCCTATTTGCAGGTGCTGAATTTGGGGCACAATAGGTTGAGTGGGAACATTCCTGATAGGCTTGGTGGTTTGAAAGCAATAGGGGTGCTTGATCTGTCTCATAATAGTCTTAATGGGTCCATCCCTGGGGCATTGGAGGGTCTTTCTTTTCTCAGTGACCTTGATGTGTCTAATAATAATCTCACTGGGTCCATTCCTTCTGGAGGTCAGTTAACTACTTTTCCAGCTGCCAGATATGAGAACAACTCTGGCCTTTGTGGGGTGCCTTTGTCAGCGTGTGGGGCTTCAAAGAATCACTCCGTTGCTGTTGGGGGTTGGAAGAAGAAGCAGCCTGCTGCAGCTGGGGTTGTCATTGGTTTGCTTTGCTTCCTCGTGTTTGCACTTGGGCTTGTGTTGGCTTTGTACCGAGTGAGGAAGACACAGAGGAAGGAGGAGATGAGGGAAAAGTATATAGAGAGTCTTCCAACTTCTGGGGGCAGTAGTTGGAAGCTATCCAGCTTTCCTGAGCCTTTGAGCATCAATGTTGCCACCTTTGAGAAGCCTCTGCGGAAGCTGACGTTTGCGCATCTTCTTGAGGCTACTAATGGTTTCAGTGCCGAGAGTTTGATAGGTTCTGGGGGGTTTGGTGAGGTGTACAAAGCTAAGCTAAAAGATGGTTGTGTTGTTGCTATCAAGAAGCTCATTCACGTGACGGGTCAGGGAGATAGGGAGTTCATGGCTGAGATGGAAACTATTGGGAAGATTAAGCATAGGAACCTGGTTCAGCTGCTGGGTTACTGTAAAGTTGGAGAGGAGAGGCTGCTTGTGTATGAGTACATGAGATGGGGAAGTCTCGAGGCTGTTTTACATGAGAGAGCAAAAGGAGGAGGTTCAAAGCTTGATTGGGCAGCAAGGAAGAAGATTGCCATAGGGTCAGCAAGAGGTCTCGCATTTCTTCACCATAGTTGCATTCCTCACATTATACACAGGGACATGAAGTCCAGCAATATTCTTCTTGATGAAAATTTTGAGGCCAGAGTTTCTGATTTTGGCATGGCGAGATTGGTTAATGCCCTCGACACTCATCTCACTGTTAGCACACTTGCCGGAACACCTGGTTATGTACCCCCTGAGTACTACCAGAGTTTTAGATGTACAGCAAaaggggatgtctatagctatggtgtcatactgctagagcttctatcagggaagagaccaatTGACTCTTCTGAGTTTGGTGATGATAGCAATCTTGTTGGATGGTCAAAGATGCTTTACAAAGAGAAAAGAATTAATGAAATACTTGATCCTGATTTAATTGTGCAAACATCTAGTGAAAGTGAACTATTACAATATTTGAGAATTGCTTTTGAATGTCTGGATGAGAGACCATACCGGCGGCCAACCATGATACAAGTGATGGCTATGTTTAAAGAGCTTCAGGTTGACACATTTAATGATATGCTTGATAGCTTCTCTCTGAGAGACAATGTTATTGATGAAGCATGA 3645 0.4636 MKREKPYLMKKMPWSPRREAPIVVRFVVIALFIMITVPTPPTAADAEAEAATTTSDAVLLIQFKHLHVSSDPYSFLSDWDPHAPSPCAWRGITCSSSGGVSAIDLSGAALSGTLHLPTLTSLSSLQNLILRGNSFSSFNLTVSPICTLETLDLSHNNFSGKFPFANLAPCIRLSYLNLSNNLITAGPGPWPELAQLDLSRNRVSDVDLLVSALGSSTLVFLNFSDNKLAGQLSETLVSKSLNLSTLDLSYNLFSGKVPPRLLNDAVQVLDFSFNNFSEFDFGFGSCENLVRLSFSHNAISSNEFPRGLGNCNNLEVLDLSHNELMMEIPSEILLNLKSLKSLFLAHNKFSGEIPSELGSLCKTLVELDLSENNLSGSLPLSFTQCSSLQSLNLARNYFSGNFLVSVVNKLRSLKYLNAAFNNITGPVPVSLVSLKELRVLDLSSNRFSGNVPSSLCPSGLENLILAGNYLSGTVPSQLGECRNLKTIDFSFNSLNGSIPWKVWALPNLTDLIMWANKLTGEIPEGICVKGGNLETLILNNNLISGSIPKSIANCTNMIWVSLASNRLTGEITAGIGNLNALAILQLGNNSLSGRIPPEIGECKRLIWLDLNSNNLTGDIPFQLADQAGLVIPGRVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYSGWTVYTFASNGSMIYLDLSYNLLSGSIPENLGEMAYLQVLNLGHNRLSGNIPDRLGGLKAIGVLDLSHNSLNGSIPGALEGLSFLSDLDVSNNNLTGSIPSGGQLTTFPAARYENNSGLCGVPLSACGASKNHSVAVGGWKKKQPAAAGVVIGLLCFLVFALGLVLALYRVRKTQRKEEMREKYIESLPTSGGSSWKLSSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKVGEERLLVYEYMRWGSLEAVLHERAKGGGSKLDWAARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSSEFGDDSNLVGWSKMLYKEKRINEILDPDLIVQTSSESELLQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTFNDMLDSFSLRDNVIDEA 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01054 1214 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 31 1200 - -
Gma04g01054 1214 Pfam Protein kinase domain 917 1187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01054 1214 Gene3D - 635 692 - -
Gma04g01054 1214 SUPERFAMILY L domain-like 266 523 - -
Gma04g01054 1214 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1038 1050 IPR008271 GO:0004672|GO:0006468
Gma04g01054 1214 ProSitePatterns Protein kinases ATP-binding region signature. 921 944 IPR017441 GO:0005524
Gma04g01054 1214 Pfam Leucine rich repeat 721 779 IPR001611 GO:0005515
Gma04g01054 1214 Pfam Leucine rich repeat N-terminal domain 55 95 IPR013210 -
Gma04g01054 1214 Gene3D Transferase(Phosphotransferase) domain 1 991 1206 - -
Gma04g01054 1214 Pfam Leucine Rich repeat 146 160 IPR001611 GO:0005515
Gma04g01054 1214 ProSiteProfiles Protein kinase domain profile. 915 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01054 1214 SUPERFAMILY Protein kinase-like (PK-like) 896 1189 IPR011009 -
Gma04g01054 1214 SMART serkin_6 915 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01054 1214 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 31 1200 - -
Gma04g01054 1214 Pfam Brassinosteroid receptor island domain 628 691 IPR045381 -
Gma04g01054 1214 SMART LRR_typ_2 578 602 IPR003591 -
Gma04g01054 1214 SMART LRR_typ_2 718 741 IPR003591 -
Gma04g01054 1214 SMART LRR_typ_2 505 529 IPR003591 -
Gma04g01054 1214 SMART LRR_typ_2 742 765 IPR003591 -
Gma04g01054 1214 SMART LRR_typ_2 311 335 IPR003591 -
Gma04g01054 1214 SMART LRR_typ_2 766 789 IPR003591 -
Gma04g01054 1214 SMART LRR_typ_2 336 360 IPR003591 -
Gma04g01054 1214 SMART LRR_typ_2 434 462 IPR003591 -
Gma04g01054 1214 PRINTS Leucine-rich repeat signature 434 447 - -
Gma04g01054 1214 PRINTS Leucine-rich repeat signature 364 377 - -
Gma04g01054 1214 Gene3D Ribonuclease Inhibitor 192 812 IPR032675 -
Gma04g01054 1214 SUPERFAMILY L domain-like 532 810 - -
Gma04g01054 1214 SUPERFAMILY L domain-like 52 330 - -
Gma04g01054 1214 Gene3D Phosphorylase Kinase; domain 1 879 990 - -
Gma04g01054 1214 Gene3D Ribonuclease Inhibitor 56 170 IPR032675 -
Gma04g01054 1214 ProSiteProfiles Leucine-rich repeat profile. 313 335 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01054 Gma-Chr4 12671046 12675269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01054 55 1213 Receptor kinase-like Gene Family AT1G55610 63.297 0.0 1446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gma04g01054 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01054 - - gmx:102670093 2330.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01054 04 12671046 12675269 Gma06g02851 06 52321657 52325834 GST