Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01028 ATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATtcttcaacgtcagcatcagcatcagcatcatcttcatcatcatcatcaccaccaGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATGTGAGTCATACTACCTGTGATACATACTCAAATTTAGTTTGCTGTATATGCATTCTATTTTGGGTAGTGATTATGGCACCGTTGAGAATTATCCACTCAGTGTCCACTCCTCTCACACGGTTTATACACGTGTAA 1491 0.4205 MSMLLRKVWERVLWRSDSSTSASASASSSSSSSPPEVACSDMGELELLPSDILMHILRLLGPKEAAKLSVVCKALRSLVSDNRLWIHFLQTHQAEPSGDSVFFAETTLSYGYPLPPFAGHWPQLSFKHIYGQRALVPGSIIIDGGSGYCKFGWSKYAYPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKENLCYVALDYEAELLKDTKASFEAAGEGWFTLSKGRFQTAEILFQPHLAGVQAMGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYVSNGIRVIPPPYGADTPWFGAKIVGNVSHTTCDTYSNLVCCICILFWVVIMAPLRIIHSVSTPLTRFIHV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01028 496 Pfam F-box domain 47 86 IPR001810 GO:0005515
Gma04g01028 496 SUPERFAMILY Actin-like ATPase domain 253 455 IPR043129 -
Gma04g01028 496 SMART fbox_2 48 88 IPR001810 GO:0005515
Gma04g01028 496 SMART actin_3 137 470 IPR004000 -
Gma04g01028 496 Gene3D - 38 132 - -
Gma04g01028 496 SUPERFAMILY F-box domain 37 96 IPR036047 GO:0005515
Gma04g01028 496 PANTHER MACRONUCLEAR ACTIN 90 493 - -
Gma04g01028 496 CDD NBD_sugar-kinase_HSP70_actin 140 284 - -
Gma04g01028 496 Gene3D - 182 455 - -
Gma04g01028 496 ProSiteProfiles F-box domain profile. 42 88 IPR001810 GO:0005515
Gma04g01028 496 Gene3D - 244 442 - -
Gma04g01028 496 Gene3D Actin; Chain A, domain 4 287 370 - -
Gma04g01028 496 PANTHER ACTIN 90 493 IPR004000 -
Gma04g01028 496 Pfam Actin 186 453 IPR004000 -
Gma04g01028 496 SUPERFAMILY Actin-like ATPase domain 139 259 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01028 Gma-Chr4 11977535 11987226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01028 186 454 Cytoskeleton Gene Families AT3G12110 34.173 1.62e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01028 K16616 - gmx:100791973 889.797