Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00973 ATGTCTTCAATGGGTCCTCCTGCTGATGAAAATATTGAAACAAAGAAAGTGGATCTCAGAAGTATGCCATCTTCTTCATTTGGTCAGGCACCACAAGCCCACAAAGTGGCAATTCCTCCGAGACAGAACCTCTTCAAGGAATTCCAAGACACTATAAAAGAAACGTTCTTTTCTGATGATCCTCTAAGACCCTTCAAAGATCAACCTAGATCAAGGAAGATCAGGCTCGGTATTGAAGCCATATTCCCAATACTTAGTTGGGGGAGAAGTTACAACCTTAAAAAATTTAGAGGAGATTTAATATCTGGTCTCACTATTGCAAGTCTTTGCATTCCTCAGGATATTGGATACGCTAAGCTTGCACATTTGGCTCCACAGTATGGACTGTACTCCAGTTTTGTTCCACCACTGATTTATGCTGTCATGGGTAGCTCTCGTGATATTGCTATAGGACCAGTGGCAGTGGTTTCTCTCTTGTTGGGGACTTTACTTAGGTTCCTGATTGACTTCCTATCCCATGCTGCTATTGTTGGTTTTATGGGGGGTGCTGCTATTACAATTGCCCTTCAACAGCTTAAGGGTTTCCTTGGCATTAAAACTAAACAGTTCACAACGAACACTGATATTGTCCATGTGATGCATTCAGTATTCAATACAGCTCATCATGGATGGAACTGGCAAACTATAGTCATGGGAGCTAGCTTTTTGGGTTTTCTTCTGGTTGCCAAATATATTGGAAAGAAAAACACGAAATTCTTCTGGGTACCAGCAATTGCTCCATTGATATCCGTTATTTTGTCCACTTTTATTGTATTCATAACCCGTGCAGATAAGCAAGGAGTAGAAATTGTAAGAAAAATAAAAAGAGGCATCAATCCATCATCTGTTAAAGATATTTATTTTACCGGAGAATACCTTGGAAAAGGTTTTAAAATTGGCATCGTGGCCGGCATGATAGCATTGACTGAAGCCACAGCAATTGGAAGAACATTTGCATCTATGAAAGACTATCAATTGGATGGGAACAGAGAAATGATGGCATTAGGAACAATGAATGTTGTTGGTTCCATGACTTCGTGTTATGTAGCAACAGGTTCTTTCTCTCGGTCTGCGGTAAATTACATGGCAGGCTGCCAAACTGCAGTCTCTAATATTGTGATGTCAGTGGTTGTGTTCTTAACCCTGAAATTCATCACTCCTCTTTTCTACTACACTCCAAATGCCATTCTTTCTGCAATCATCATTTCTGCTGTCATCAGTCTTGTAGACTATGAGGCAGCAATTTTGATCTGGAAGATAGATAAATTTGATTTTGTTGCTTGCATGGGTGCATTCTTTGGGGTTGCTTTTGTCTCGGTTGAGAAAGGACTTCTAATTGCTGTCTCTATTTCCTATGCCAAGATCCTATTACAAGTCACAAGGCCCCGAACTGCAATTCTGGGGAAGATTCCTAGGACTACTGTGTATAGAAACATTCAACAATATCCAGAAGCTAGTAAGATTCCAGGTGTACTGATTGTAAGAGTCGATTCTGCAATATATTTTTCCAACTCCAATTATGTAAAAGAAAGGATATTAAGATGGCTGATGGATGAAGAAAAAGGAGACTACCGCACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACGGACATAGACACAAGTGGCATCCAAGCCTTTGAAGAGTTACACAGAAGTCTTGAGAAGAAGGGTGTTGAGCTTGTTTTGGCAAATCCTGGGCCAGCAGTGACAGACAAGCTTTACGCATCCAGTTTTGCAAACACGATTGGCGAGGACAAGATCTTCCTCACTGTTGCACAGGCTGTTGCATATTGTTCTCCAAAGGTGGTTGAGGACCCATGA 1869 0.4077 MSSMGPPADENIETKKVDLRSMPSSSFGQAPQAHKVAIPPRQNLFKEFQDTIKETFFSDDPLRPFKDQPRSRKIRLGIEAIFPILSWGRSYNLKKFRGDLISGLTIASLCIPQDIGYAKLAHLAPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLRFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKTKQFTTNTDIVHVMHSVFNTAHHGWNWQTIVMGASFLGFLLVAKYIGKKNTKFFWVPAIAPLISVILSTFIVFITRADKQGVEIVRKIKRGINPSSVKDIYFTGEYLGKGFKIGIVAGMIALTEATAIGRTFASMKDYQLDGNREMMALGTMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSVVVFLTLKFITPLFYYTPNAILSAIIISAVISLVDYEAAILIWKIDKFDFVACMGAFFGVAFVSVEKGLLIAVSISYAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEASKIPGVLIVRVDSAIYFSNSNYVKERILRWLMDEEKGDYRTKIQFLIVEMSPVTDIDTSGIQAFEELHRSLEKKGVELVLANPGPAVTDKLYASSFANTIGEDKIFLTVAQAVAYCSPKVVEDP 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00973 622 Pfam Sulfate permease family 164 442 IPR011547 GO:0016021
Gma04g00973 622 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Gma04g00973 622 CDD STAS_SulP_like_sulfate_transporter 495 607 - -
Gma04g00973 622 SUPERFAMILY SpoIIaa-like 496 615 IPR036513 -
Gma04g00973 622 ProSiteProfiles STAS domain profile. 494 614 IPR002645 -
Gma04g00973 622 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 164 622 - -
Gma04g00973 622 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 13 165 - -
Gma04g00973 622 TIGRFAM sulP: sulfate permease 165 610 IPR001902 GO:0015301|GO:0016020|GO:0055085
Gma04g00973 622 MobiDBLite consensus disorder prediction 1 33 - -
Gma04g00973 622 Pfam STAS domain 495 610 IPR002645 -
Gma04g00973 622 Gene3D STAS domain 474 618 IPR036513 -
Gma04g00973 622 PANTHER SULFATE TRANSPORTER 164 622 IPR001902 GO:0015301|GO:0016020|GO:0055085
Gma04g00973 622 PANTHER SULFATE TRANSPORTER 13 165 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00973 Gma-Chr4 10264881 10271879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00973 1 621 Inorganic Solute Cotransporters AT1G22150 68.333 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00973 K17470 - gmx:100804208 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00973 04 10264881 10271879 Gma04g00973 04 10264881 10271879 ECH
Gma04g00973 04 10264881 10271879 Gma06g00946 06 8775154 8779626 GST
Gma14g01696 14 46022237 46026367 Gma04g00973 04 10264881 10271879 PCT
Gma04g00973 04 10264881 10271879 Gma14g01696 14 46022237 46026367 PCT