Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00957 ATGGCAGCTATGATGGATTTTTACAGCAGCAGCACAGAGTTTCAACTTCACTCAGATCCATTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTTCTCAACCCCTTCTCCTTCAAATTCTTGTTTTCTTTCTACCTCTTACTCTCCTTCCCCCAACAACTACTCTCCCTCCCTATACTCAAACGGGTTATCATCCATACCCAACACCACCCAAAACTTAATTGGTTTCGGGCAAGGGCAGCCCACATCTCTTGTGGGCCTGAACCACCTAACCCCATCTCAGATCTCTCAGATCCAGGCCCAAATCCAGATCCAGAATCACAGCAACACGCTGAGCTTCCTGGGGCCGAAGCCCATCCCTATGAAGCACGTGGGCATGCCTCCGAAGCCCACGAAGCTATACAGAGGGGTTCGACAGAGGCACTGGGGGAAGTGGGTGGCTGAGATTAGACTCCCGAAGAACCGGACCAGGCTATGGCTGGGAACCTTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAGCTCCGAGGTGACTTCGCCAGGCTCAACTTCCCCAACCTCCGACACCAGGGTTCCTCCGTCGGTGGTGACTTCGGGGAGTATAAGCCTCTTCATTCCGCCGTTGACGCCAAGCTTCAGGCCATTTGCGAGGGCCTGGCTGAGCTGCAGAAACAGGGGAAGACCGAGAAGCCTCCGAGGAAAACGCGATCCAAACTCGCTTCTCCGCCAGAGAACGACAACAACAACGACAACAACTCTTGTAAGGTCGAAGCTGCTTCCTCCTCTTCTGAAGGTTCTTCGCCGCTTTCGGTTCTGACTTTCGCTGACGTCAGCGAGCCGCAGTGGGAAGGTGATTCGGATAATTTTAATCTCCAGAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 945 0.5312 MAAMMDFYSSSTEFQLHSDPFRGELMEVLEPFMKSPFSTPSPSNSCFLSTSYSPSPNNYSPSLYSNGLSSIPNTTQNLIGFGQGQPTSLVGLNHLTPSQISQIQAQIQIQNHSNTLSFLGPKPIPMKHVGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSAVDAKLQAICEGLAELQKQGKTEKPPRKTRSKLASPPENDNNNDNNSCKVEAASSSSEGSSPLSVLTFADVSEPQWEGDSDNFNLQKYPSYEIDWDSL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00957 314 ProSiteProfiles AP2/ERF domain profile. 138 195 IPR001471 GO:0003700|GO:0006355
Gma04g00957 314 SUPERFAMILY DNA-binding domain 138 196 IPR016177 GO:0003677
Gma04g00957 314 MobiDBLite consensus disorder prediction 251 282 - -
Gma04g00957 314 SMART rav1_2 138 201 IPR001471 GO:0003700|GO:0006355
Gma04g00957 314 MobiDBLite consensus disorder prediction 233 282 - -
Gma04g00957 314 MobiDBLite consensus disorder prediction 233 250 - -
Gma04g00957 314 Pfam AP2 domain 139 187 IPR001471 GO:0003700|GO:0006355
Gma04g00957 314 Gene3D AP2/ERF domain 138 196 IPR036955 GO:0003700|GO:0006355
Gma04g00957 314 CDD AP2 137 197 IPR001471 GO:0003700|GO:0006355
Gma04g00957 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 313 - -
Gma04g00957 314 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Gma04g00957 314 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Gma04g00957 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00957 Gma-Chr4 9886883 9888635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00957 1 314 AP2-EREBP Transcription Factor Family AT1G78080 52.890 7.86e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma04g00957 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00957 K09286 - gmx:732559 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00957 04 9886883 9888635 Gma04g00957 04 9886883 9888635 ECH
Gma04g00957 04 9886883 9888635 Gma06g00936 06 8666628 8670071 GST
Gma14g01716 14 46527958 46529317 Gma04g00957 04 9886883 9888635 PCT
Gma04g00957 04 9886883 9888635 Gma14g01716 14 46527958 46529317 PCT