Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00955 ATGATGACGAACCAAAATGTGGTGACTCATGAGGTTATTAACACGTTGATTGCCGTGGCAGCTTCCATTTCAAACTCAACCGCGTTGCCAAGTGCAACAGTGCCAGAATCCATGGCTGTGCTTGGTGGGTTTTGGGGGCTGCCCCATAATAAAAATCTTGTGAAAAGGTTGGAAGGAGCTAAAGTTAGTGCTTGGATTGATTCAATGAGAGCTTCTTCCCCAACTCGTGCCAAATCAGAAAGCCAAGAAAAAAGATCTTGGATTCTTTATCACCCTTCAGCTCTGAACACGTTTGAGCAAATAGTATGTAGTGCCAAAGGAAAGCAAGTCGTAGTTTTTCTTGACTACGATGGAACTCTCTCCCCAATTGTTGCAGATCCGGATAAAGCTTTCATGACTAGAAAGATGAGAGCAACGCTAAAGGGCATAGCAAGGCATTTTCCCACAGCAATAGTGACCGGAAGGTGCAGAGACAAGGTATATAACTTTGTAAAATTGGCAGAACTTTACTATGCCGGAAGCCATGGCATGGACATCAAGGGTCCAACAAAAAGCCAAAGTCCAAAGCAAGGTAATAATAATAAAGCAGTGCTGTTCCAACCCGCGAGTCAATTCCTGCCAATGATCGATGAGGTGTACAAGATCTTGTTAGAAAAAACAAAGACTGTCCCAGGGGCTAATGTTGAGAACAATAAGTTTTGCTTGTCCGTGCACTTTCGTTGTGTTGACGAAAAGAGTTGGGCAGCGTTGGCGGAGAAAGTTAGATTGGTGCTCAATGATTACCCACAACTTAGGCTAACCCAAGGGAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAATTTTTGTTAGAATCATTAGGATACGAGAATTCGAATGATGTATTTCCAATATATATTGGTGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTGCGCAGTAGGGGTCAAGGAATTGGGATTCTTGTTTCTAGAGTTGCAAAAGAAACAGATGCTTCCTATACCTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGCGTCTGGTGGAGTGGAAAAGACCGAGTACTGTGACTCCCACAAGTGTATAG 1116 0.4346 MMTNQNVVTHEVINTLIAVAASISNSTALPSATVPESMAVLGGFWGLPHNKNLVKRLEGAKVSAWIDSMRASSPTRAKSESQEKRSWILYHPSALNTFEQIVCSAKGKQVVVFLDYDGTLSPIVADPDKAFMTRKMRATLKGIARHFPTAIVTGRCRDKVYNFVKLAELYYAGSHGMDIKGPTKSQSPKQGNNNKAVLFQPASQFLPMIDEVYKILLEKTKTVPGANVENNKFCLSVHFRCVDEKSWAALAEKVRLVLNDYPQLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRVAKETDASYTLQDPSEVEQFLRRLVEWKRPSTVTPTSV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00955 371 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 112 322 IPR006379 -
Gma04g00955 371 SUPERFAMILY HAD-like 111 360 IPR036412 -
Gma04g00955 371 TIGRFAM T6PP: trehalose-phosphatase 107 358 IPR003337 GO:0003824|GO:0005992
Gma04g00955 371 Pfam Trehalose-phosphatase 113 348 IPR003337 GO:0003824|GO:0005992
Gma04g00955 371 Gene3D - 110 208 IPR023214 -
Gma04g00955 371 Gene3D - 225 367 IPR023214 -
Gma04g00955 371 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 365 - -
Gma04g00955 371 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 365 IPR044651 GO:0004805|GO:0005992
Gma04g00955 371 CDD HAD_TPP 111 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00955 Gma-Chr4 9838702 9840886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00955 106 357 Trehalose Biosynthesis Gene Families AT1G70290 26.296 6.95e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00955 K01087 - gmx:100788641 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00955 04 9838702 9840886 Gma06g00934 06 8649789 8652774 GST
Gma14g01718 14 46566067 46569045 Gma04g00955 04 9838702 9840886 PCT
Gma04g00955 04 9838702 9840886 Gma14g01718 14 46566067 46569045 PCT