Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00927 ATGAGTGAGACAGCGACTCTTCATGCACAAACAAGGACACCCATTTCTTCTTTGGATTCAATGGCTCATCACCACCCGCATTATCGGTCACCCTTCGGAGACACAACGTTCACCAAATTGTTCGTTGGAGGACTAGCTTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCGAGCAGTTCGGTAACATTCTTGAAGCTGTCATCATCACTGACAAGAACACCGGAAAATCCAAAGGCTATGGATTCGTAACATTCTGTGATCAAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAATAATAGATGGAAGAAGAGCAAATTGTAATATTGCTTCTCTTGGAAGGACTAGACTATCACCACCTAGAGggaggAATGTAGTTCAAGGTGGAGGAGGAACAGCACAGGGTGTTCCGGGAGTGGGACTGCCACCGTCGCTGCCCCCGCCACCACCTGTTCTGTACCCACCATATGGCTATACAACCTACACTCCTGATTATGGGTACCACCAAGCCACAATGTACAACCCACAGATTCAGCAACCACAATACTATCAACAACTTTATGGAGCATCATCTTCTACCATGAGCACCCCATATTACTATGGTTATTCTGTGCAAGCACCAAGAAACGCATTTTCTTCACCCCAAGCAAATCGCCTATCACCTGGACCATCCTATCTATACTACCCTACACCAATGGAAGTCTCATTCTCTGGATATCGTCCACCCCAACAAACACCAATGAGGCAAACCTTTGCTTCCCCTAATGATTCACAGAGTCAGCAGCGTACCTCCTCTGAAACAGCAGCCGGGGTAGCTATAACATCAGAAAGATCGAATACCCAAGGGAAGAACTAA 864 0.463 MSETATLHAQTRTPISSLDSMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFEQFGNILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRLSPPRGRNVVQGGGGTAQGVPGVGLPPSLPPPPPVLYPPYGYTTYTPDYGYHQATMYNPQIQQPQYYQQLYGASSSTMSTPYYYGYSVQAPRNAFSSPQANRLSPGPSYLYYPTPMEVSFSGYRPPQQTPMRQTFASPNDSQSQQRTSSETAAGVAITSERSNTQGKN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00927 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Gma04g00927 287 SUPERFAMILY RNA-binding domain, RBD 22 137 IPR035979 GO:0003676
Gma04g00927 287 PANTHER GEO13361P1-RELATED 24 277 - -
Gma04g00927 287 SMART rrm1_1 39 111 IPR000504 GO:0003723
Gma04g00927 287 CDD RRM_RBM24_RBM38_like 38 113 - -
Gma04g00927 287 MobiDBLite consensus disorder prediction 240 287 - -
Gma04g00927 287 MobiDBLite consensus disorder prediction 1 22 - -
Gma04g00927 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Gma04g00927 287 PANTHER - 24 277 - -
Gma04g00927 287 MobiDBLite consensus disorder prediction 1 18 - -
Gma04g00927 287 Gene3D - 6 135 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00927 Gma-Chr4 9385466 9389910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00927 34 114 C2H2 Transcription Factor Family AT2G19380 39.506 5.65e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00927 K25006 - gmx:100811977 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00927 04 9385466 9389910 Gma04g00927 04 9385466 9389910 ECH
Gma04g00927 04 9385466 9389910 Gma06g00910 06 8386940 8391445 GST
Gma14g01742 14 47250931 47255665 Gma04g00927 04 9385466 9389910 PCT
Gma04g00927 04 9385466 9389910 Gma14g01742 14 47250931 47255665 PCT