Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma04g00905 | ATGGCGCTACTACGTCTTGTTTGCTTAACTTCAACAAATCAGTTATCAACTCAATCCACCTCTTTCTCTTTTCTTCGCAAAACACCCCATTCTCAATCCATCCATATCGATCCCTCTTCCTTTCACTTTCCACGCCTATCCCTTATCACAACCACTCTCACACACGCCCAACAAGCCAACCCTGTTGTCGCCGAAGAAGAATTTTCTCGCACCAGGTTACTCGCTCAGAACGTGCCCTGGACAAGCACCCCCGAAGATATTCGCTCTTTGTTCGAAAAACATGGAAAAGTCCTCCAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCCCCAGAAGAAGCACTTGAAGCTCTCAATAATCTCGAATCGTATGAGTTTGAGGGTCGTGTAATCAAAGTCAATTATGCTCGGCCGAAAAAGGAGAAAACGCCGCCCCCTGTGAAACCAAAGGTGGTGACGTTTAACTTGTTTGTTGCCAACTTGTCCTATGAAGCGAGCGCCAAAGATCTCAAGGAGTTTTTTGATTCTGGAACTGGTAAAGTTGTGTCTGCTGAGGTTGTGTATCGTGATAATCCTAGAAGGCCGTCTGGTTATGGATTTGTGTCCTACAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTGCTGAGTTCCAAGGAAAGATTTTTATGGGAAGGCCAATCAGGGTGGATCGGGGTCGGCGATTTGTtcaacaacctggggacgggagtgcaaagtctgaagatacaccttctgatttgagtgtgaatggggcagaagctcaacaacctgcagagggcagtgcaaagtctgaagatactccttctgagttgagcgtgaatggggaagaagctGACAAAGTTGATTGA | 894 | 0.3837 | MALLRLVCLTSTNQLSTQSTSFSFLRKTPHSQSIHIDPSSFHFPRLSLITTTLTHAQQANPVVAEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLQVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYARPKKEKTPPPVKPKVVTFNLFVANLSYEASAKDLKEFFDSGTGKVVSAEVVYRDNPRRPSGYGFVSYKSKKEAEAALAEFQGKIFMGRPIRVDRGRRFVQQPGDGSAKSEDTPSDLSVNGAEAQQPAEGSAKSEDTPSELSVNGEEADKVD | 297 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma04g00905 | 297 | SMART | rrm1_1 | 165 | 239 | IPR000504 | GO:0003723 | |
Gma04g00905 | 297 | SMART | rrm1_1 | 72 | 144 | IPR000504 | GO:0003723 | |
Gma04g00905 | 297 | CDD | RRM_SF | 166 | 239 | - | - | |
Gma04g00905 | 297 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 166 | 237 | IPR000504 | GO:0003723 | |
Gma04g00905 | 297 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 76 | 142 | IPR000504 | GO:0003723 | |
Gma04g00905 | 297 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 1 | 270 | - | - | |
Gma04g00905 | 297 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 164 | 243 | IPR000504 | GO:0003723 | |
Gma04g00905 | 297 | MobiDBLite | consensus disorder prediction | 245 | 297 | - | - | |
Gma04g00905 | 297 | PANTHER | OS08G0483200 PROTEIN | 1 | 270 | - | - | |
Gma04g00905 | 297 | Gene3D | - | 52 | 153 | IPR012677 | - | |
Gma04g00905 | 297 | Gene3D | - | 154 | 279 | IPR012677 | - | |
Gma04g00905 | 297 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 71 | 148 | IPR000504 | GO:0003723 | |
Gma04g00905 | 297 | MobiDBLite | consensus disorder prediction | 251 | 286 | - | - | |
Gma04g00905 | 297 | SUPERFAMILY | RNA-binding domain, RBD | 71 | 240 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma04g00905 | Gma-Chr4 | 9081910 | 9084149 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma04g00905 | 71 | 246 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 29.167 | 6.03e-15 | 73.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma04g00905 | - | - | gmx:100806480 | 551.206 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma04g00905 | 04 | 9081910 | 9084149 | Gma04g00905 | 04 | 9081910 | 9084149 | ECH | |
Gma04g00905 | 04 | 9081910 | 9084149 | Gma06g00891 | 06 | 8229617 | 8231949 | GST |