Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00905 ATGGCGCTACTACGTCTTGTTTGCTTAACTTCAACAAATCAGTTATCAACTCAATCCACCTCTTTCTCTTTTCTTCGCAAAACACCCCATTCTCAATCCATCCATATCGATCCCTCTTCCTTTCACTTTCCACGCCTATCCCTTATCACAACCACTCTCACACACGCCCAACAAGCCAACCCTGTTGTCGCCGAAGAAGAATTTTCTCGCACCAGGTTACTCGCTCAGAACGTGCCCTGGACAAGCACCCCCGAAGATATTCGCTCTTTGTTCGAAAAACATGGAAAAGTCCTCCAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCCCCAGAAGAAGCACTTGAAGCTCTCAATAATCTCGAATCGTATGAGTTTGAGGGTCGTGTAATCAAAGTCAATTATGCTCGGCCGAAAAAGGAGAAAACGCCGCCCCCTGTGAAACCAAAGGTGGTGACGTTTAACTTGTTTGTTGCCAACTTGTCCTATGAAGCGAGCGCCAAAGATCTCAAGGAGTTTTTTGATTCTGGAACTGGTAAAGTTGTGTCTGCTGAGGTTGTGTATCGTGATAATCCTAGAAGGCCGTCTGGTTATGGATTTGTGTCCTACAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTGCTGAGTTCCAAGGAAAGATTTTTATGGGAAGGCCAATCAGGGTGGATCGGGGTCGGCGATTTGTtcaacaacctggggacgggagtgcaaagtctgaagatacaccttctgatttgagtgtgaatggggcagaagctcaacaacctgcagagggcagtgcaaagtctgaagatactccttctgagttgagcgtgaatggggaagaagctGACAAAGTTGATTGA 894 0.3837 MALLRLVCLTSTNQLSTQSTSFSFLRKTPHSQSIHIDPSSFHFPRLSLITTTLTHAQQANPVVAEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLQVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYARPKKEKTPPPVKPKVVTFNLFVANLSYEASAKDLKEFFDSGTGKVVSAEVVYRDNPRRPSGYGFVSYKSKKEAEAALAEFQGKIFMGRPIRVDRGRRFVQQPGDGSAKSEDTPSDLSVNGAEAQQPAEGSAKSEDTPSELSVNGEEADKVD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00905 297 SMART rrm1_1 165 239 IPR000504 GO:0003723
Gma04g00905 297 SMART rrm1_1 72 144 IPR000504 GO:0003723
Gma04g00905 297 CDD RRM_SF 166 239 - -
Gma04g00905 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 237 IPR000504 GO:0003723
Gma04g00905 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 142 IPR000504 GO:0003723
Gma04g00905 297 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 270 - -
Gma04g00905 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Gma04g00905 297 MobiDBLite consensus disorder prediction 245 297 - -
Gma04g00905 297 PANTHER OS08G0483200 PROTEIN 1 270 - -
Gma04g00905 297 Gene3D - 52 153 IPR012677 -
Gma04g00905 297 Gene3D - 154 279 IPR012677 -
Gma04g00905 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Gma04g00905 297 MobiDBLite consensus disorder prediction 251 286 - -
Gma04g00905 297 SUPERFAMILY RNA-binding domain, RBD 71 240 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00905 Gma-Chr4 9081910 9084149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00905 71 246 Eukaryotic Initiation Factors Gene Family AT3G16380 29.167 6.03e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00905 - - gmx:100806480 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00905 04 9081910 9084149 Gma04g00905 04 9081910 9084149 ECH
Gma04g00905 04 9081910 9084149 Gma06g00891 06 8229617 8231949 GST