Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00903 ATGGCACTAGAGGCTGTGGTTTTCCCGCAAGATCCATTCACATATGGTTGCGACAAGGATTATTTGTACTCCTTAGTAGAACACAACTATGGTAATTTCCAAGCAGCGGAAGAAGAGAAAGTCCTCCTAGGAATCATCAACAACAACATAGAACACAACTTTCATGCAAACTGGGATTCATCTTCTACCTCAATGTTGCAAAACGTCAAGGAACAACAATGGGATTCTCACTCCTCCCCTGAAGCATGCACCGTTGATCAATCCATGACCACCGCTCCTTTCCCTCCTCCTCCTCCTTCTTCCTCCGTGGAAGCCACCGTGACTGCCACGAGTCGCCGTAAACGACGCCGCACCAAGAGCGCCAAGAACACGGAGGAAATCGAGAACCAGAGGAGGACCCACATTGCTGTTGAACGCAACCGCCGAAAACAGATGAATGAGTACTTGGCCGTGCTCCGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGAGGGGCCATAAACTTTGTGAAGGAGTTGGAGCAGCTTTTGCAGTCGATGGAGGGTCAAAAGAGAACGAACCAAGCGCAAGAGAATGTTGTTGGGTTAAATGGGTCGACAACAACACCCTTTGCTGAGTTCTTCACGTTTCCTCAATACACGACACGTGGCAGGACGATGGCACAGGAGCAGAAACAGTGGGCTGTAGCAGACATTGAAGTGACCATGGTGGATAGCCATGCGAATCTAAAGGTACTCTCAAAGAAACAACCTGGGCAGCTTATGAAGATCGTTGTTGGGCTTCAAAGTCTCATGCTCAGTATTCTCCACCTTAATGTTTCCACTCTTGACGACATGGTCCTTTACTCAATTAGCGTCAAGGTAGAGGACGGGTGTCGGCTGAACACGGTGGATGAAATTGCGGCTGCAGTGAATCAGCTATTACGCACAATCCAAGAAGTTACTTTCAGCTGA 975 0.4821 MALEAVVFPQDPFTYGCDKDYLYSLVEHNYGNFQAAEEEKVLLGIINNNIEHNFHANWDSSSTSMLQNVKEQQWDSHSSPEACTVDQSMTTAPFPPPPPSSSVEATVTATSRRKRRRTKSAKNTEEIENQRRTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKRTNQAQENVVGLNGSTTTPFAEFFTFPQYTTRGRTMAQEQKQWAVADIEVTMVDSHANLKVLSKKQPGQLMKIVVGLQSLMLSILHLNVSTLDDMVLYSISVKVEDGCRLNTVDEIAAAVNQLLRTIQEVTFS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00903 324 PANTHER MAX DIMERIZATION, MAD 1 320 - -
Gma04g00903 324 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 320 - -
Gma04g00903 324 MobiDBLite consensus disorder prediction 80 127 - -
Gma04g00903 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 180 IPR011598 GO:0046983
Gma04g00903 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 200 IPR036638 GO:0046983
Gma04g00903 324 Coils Coil 177 200 - -
Gma04g00903 324 Pfam Helix-loop-helix DNA-binding domain 130 181 IPR011598 GO:0046983
Gma04g00903 324 Gene3D - 110 198 IPR036638 GO:0046983
Gma04g00903 324 CDD bHLH_AtFAMA_like 133 199 - -
Gma04g00903 324 SMART finulus 135 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00903 Gma-Chr4 9055281 9057135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00903 1 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.065 7.44e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma04g00903 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00903 - - gmx:100805420 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00903 04 9055281 9057135 Gma04g00903 04 9055281 9057135 ECH
Gma04g00903 04 9055281 9057135 Gma06g00889 06 8217394 8219276 GST
Gma14g01774 14 47846886 47850170 Gma04g00903 04 9055281 9057135 PCT
Gma02g01997 02 45406441 45410051 Gma04g00903 04 9055281 9057135 PCT
Gma04g00903 04 9055281 9057135 Gma14g01774 14 47846886 47850170 PCT
Gma04g00903 04 9055281 9057135 Gma02g01997 02 45406441 45410051 PCT