Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00900 ATGACCACTTTCACACACTCCATTTTCCACCATGACCTTCTTTTTCTTTTCTATTTCTTTCTCCTCACGGAATTTCCGCCGCAGGCCACCGCGCAGCCTCCGAACACGCTGACGCCGCCGCCGCAGCAGGACCGCTTTACGAGGCTGAAGTTCGACAAATCCATGGCCATCGTTCTGCTGATCCTGGTGGTGGTGTTCTTCATCCTAGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGCAGGATGGGAGGGAGGTTCGACCTCTCCATCTTGATCTCGCGCCGGCAACGCGGCCTCGGCCGCGAAGTCATCGAAACGTTCCCGACGTTCGTGTACTCCACCGTGAAGAGCCTCAAGATAGGGCGCGCCACGCTAGAATGCGCCGTGTGCCTAAACGAGTTCGAGGAGGATGAAACGCTACGTTTCATCCCCAACTGCAGCCACGTGTTCCACTCCGACTGCATCGACGCGTGGCTCGCAAACCACTCCACTTGCCCCGTCTGTCGCGCCAATCTTACTTCCAAACCCGATGACCGGTGTTCTGCTCCTATCCAAAACCCGGATCCGGAGCAGCCCGTTTTAACCTCATCAACCCGACCCGAAACCGTGGGTGCTGATTTGCTTAGTCAGAACCGTACACCGCCGCGACCATGGTCAACGGGTCTTAGTATCGCGAGTTGGTTTCCGCGGTCTCACTCGACGGGGCACTCGCTGGTTCAACCCGGGGAGAATTGTGAACGGTTTACGCTGCGTTTGCCTGAGGAAGTGCGGAACGAGCTTATGCTGAGTCGCACCAAGAGTTGCGGCGTGAGCGTGACGTTCACGCGCGAGAATAGTGGAAGGAGGGGTTACAGGGCAAGGAGCCTTGGTAGCAGCCTCAGCCCTCACGTGACAAGAAACAGCACCAGTCCTCACGTGAGGTGGTGGTTTTCTCGGCCACGCTCGATTAAGGATGATGTCGGGGAACGGTCTTCGGATCGGTTATTCTCCACGACAAGGGATATTAGTGAGGTTTAG 1023 0.5728 MTTFTHSIFHHDLLFLFYFFLLTEFPPQATAQPPNTLTPPPQQDRFTRLKFDKSMAIVLLILVVVFFILGFLSVYTRQCAERRMGGRFDLSILISRRQRGLGREVIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEDETLRFIPNCSHVFHSDCIDAWLANHSTCPVCRANLTSKPDDRCSAPIQNPDPEQPVLTSSTRPETVGADLLSQNRTPPRPWSTGLSIASWFPRSHSTGHSLVQPGENCERFTLRLPEEVRNELMLSRTKSCGVSVTFTRENSGRRGYRARSLGSSLSPHVTRNSTSPHVRWWFSRPRSIKDDVGERSSDRLFSTTRDISEV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00900 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 177 IPR013083 -
Gma04g00900 340 SMART ring_2 129 170 IPR001841 -
Gma04g00900 340 MobiDBLite consensus disorder prediction 180 202 - -
Gma04g00900 340 Pfam Ring finger domain 128 171 IPR001841 -
Gma04g00900 340 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Gma04g00900 340 CDD RING-H2_PA-TM-RING 128 171 - -
Gma04g00900 340 PANTHER RING-H2 FINGER PROTEIN ATL11 13 273 - -
Gma04g00900 340 SUPERFAMILY RING/U-box 123 178 - -
Gma04g00900 340 PANTHER RING FINGER DOMAIN-CONTAINING 13 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00900 Gma-Chr4 9027530 9029239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00900 1 290 Rapid Response to Elicitors AT3G05200 39.432 4.51e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00900 K10664 - gmx:100815936 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00900 04 9027530 9029239 Gma04g00900 04 9027530 9029239 ECH