Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00883 ATGGCGACCGTGAATCCGCAGCCTCTGCAGTTCGAGGACCCAGCGATACCCGTCGACGATGACGATGACGACGACGACGACGGTGGTGATGATGATGCTATGGATGAGTTGGAGGATGCAAATGTTAACTCAGTGAACGTTACTAATGCCGCGAGTGTAAATCATGAAGCGGTAGTGGCTATGCCTTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGAGAAGTTTATGTCTTTCCCGCTGTCACTCCTCAGAAGGTGCAAGCTGTCTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAGGTGTGCCAGCAGTTGAACCACCATTTGATCAAAGTAACAGGGACATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTGGTCAGGTTCCGCGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCCGTCAGAAAAGAGGTAGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCTTCCTTGAAGGAAAGCCCAGGTTCATCTAATTGGGATTCTGCACAGAGTTCTGGTCAAGTTGGCACTTCTCATTCTGAATCTGTACGTAGATGTCACCATTGTGGTGTCGGTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTCAGTAAGGGTGGAAGGAATCTTTCTGTTGAGCAAAGTGATCTGGACACTCCTATTGATGTCAAGCCTACTTCTGTTCTTGAAGGGGAATTGCCTGGCATCCATGATGAGCAAGGTAGTTCTGAAGATCCTTCCAAGTCCAATGCAGCGGATGGTTCTAGTAATCATGCTGTAAACCCCAGTGATGAGGAATTGCCTGAAACTGCAGAACACTTTACGAACGTTCTGCCACTGGGAATTGGTCATTCTTCAACAAATGACAGTGAACAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGATACAGATATTGACATTCCAGGAAACTTTGATTAG 1053 0.4739 MATVNPQPLQFEDPAIPVDDDDDDDDDGGDDDAMDELEDANVNSVNVTNAASVNHEAVVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQAGVPAVEPPFDQSNRDMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSAQSSGQVGTSHSESVRRCHHCGVGENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPGIHDEQGSSEDPSKSNAADGSSNHAVNPSDEELPETAEHFTNVLPLGIGHSSTNDSEQEPLVELSNPSDTDIDIPGNFD 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00883 350 MobiDBLite consensus disorder prediction 105 124 - -
Gma04g00883 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 244 - -
Gma04g00883 350 Pfam CCT motif 129 170 IPR010402 GO:0005515
Gma04g00883 350 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Gma04g00883 350 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 350 - -
Gma04g00883 350 SMART tify_2 61 96 IPR010399 -
Gma04g00883 350 MobiDBLite consensus disorder prediction 238 350 - -
Gma04g00883 350 MobiDBLite consensus disorder prediction 163 196 - -
Gma04g00883 350 MobiDBLite consensus disorder prediction 15 36 - -
Gma04g00883 350 Pfam tify domain 63 95 IPR010399 -
Gma04g00883 350 Gene3D - 191 251 IPR013088 GO:0006355|GO:0008270
Gma04g00883 350 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Gma04g00883 350 CDD ZnF_GATA 199 243 IPR000679 GO:0006355|GO:0043565
Gma04g00883 350 MobiDBLite consensus disorder prediction 1 36 - -
Gma04g00883 350 MobiDBLite consensus disorder prediction 282 300 - -
Gma04g00883 350 PANTHER GATA TRANSCRIPTION FACTOR 28 1 350 IPR045280 GO:0006355
Gma04g00883 350 MobiDBLite consensus disorder prediction 317 336 - -
Gma04g00883 350 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
Gma04g00883 350 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Gma04g00883 350 MobiDBLite consensus disorder prediction 170 194 - -
Gma04g00883 350 ProSiteProfiles Tify domain profile. 61 96 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00883 Gma-Chr4 8772501 8791261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00883 5 242 Tify Gene Family AT1G51600 49.606 4.60e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma04g00883 CCT 1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00883 - - gmx:100801328 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00883 04 8772501 8791261 Gma06g00872 06 8034886 8049747 GST