Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00882 ATGTTCGGCTCCATCAACCAGATCGTCTCCGCCGAAGACACcgacggccccgtctccgaccaccacatccattacagttcccacaccatcgaagacgacggcgccgcctccgatcaccacatccattacagttcccacaccatcgaagaagacggcgccgcctccgaccaccacatccattacagttcccacaccatcgaagacgatggtgccgcTGTCGAAGACGTTTCCGCCGTTCCGGGCCCTGAAATCTCTATCGACAATTCTAGCCAGCTCACGCTCTCGTTTCGCGGCCAAGTCTATGTCTTCGATGCTGTTACACCTGATAAGGTTCAAGCAGTGTTGTTGCTGCTGGGAGGAAATGAACTAACTTCGGGTTCGCAATGTGCGGAGCTATCATCTCGAAATCAGACTGGTGAGGAGGAATATCCTGCAAAATGTAGTCTACCACATCGAGCAGCGTCATTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGAAATAAGGGTCAATTTACTTCATCAAAGAATCAGGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGGCAGGATGCTGTTCAATCAGAAACCTTGTGCTGCACACATTGTGGAATAAGTTCAAAATCCACTCCAATGATGCGTAAGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCTGGAACACTCTCTTACACCACCTGAGCAGGTTGATGAGGGCAGTAATAATAATGCCTTGGACATTCGGAGTGGCATCCCTGCACAGCATAACAATCTTGTTAATGATAGCAAAGCTTTGGTATCTGATCGTTGA 930 0.3763 MFGSINQIVSAEDTDGPVSDHHIHYSSHTIEDDGAASDHHIHYSSHTIEEDGAASDHHIHYSSHTIEDDGAAVEDVSAVPGPEISIDNSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGNELTSGSQCAELSSRNQTGEEEYPAKCSLPHRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKNQDGTNSWGSDQESGQDAVQSETLCCTHCGISSKSTPMMRKGPSGPRSLCNACGLFWANRGTLRDLSKRNLEHSLTPPEQVDEGSNNNALDIRSGIPAQHNNLVNDSKALVSDR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00882 309 CDD ZnF_GATA 221 265 IPR000679 GO:0006355|GO:0043565
Gma04g00882 309 MobiDBLite consensus disorder prediction 270 309 - -
Gma04g00882 309 SMART tify_2 85 120 IPR010399 -
Gma04g00882 309 MobiDBLite consensus disorder prediction 187 209 - -
Gma04g00882 309 ProSitePatterns GATA-type zinc finger domain. 221 248 IPR000679 GO:0006355|GO:0043565
Gma04g00882 309 ProSiteProfiles Tify domain profile. 85 120 IPR010399 -
Gma04g00882 309 Pfam GATA zinc finger 221 257 IPR000679 GO:0006355|GO:0043565
Gma04g00882 309 MobiDBLite consensus disorder prediction 274 309 - -
Gma04g00882 309 PANTHER GATA TRANSCRIPTION FACTOR 28 28 291 IPR045280 GO:0006355
Gma04g00882 309 SMART GATA_3 215 268 IPR000679 GO:0006355|GO:0043565
Gma04g00882 309 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515
Gma04g00882 309 Pfam CCT motif 152 194 IPR010402 GO:0005515
Gma04g00882 309 PANTHER GATA TRANSCRIPTION FACTOR 25 28 291 - -
Gma04g00882 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 266 - -
Gma04g00882 309 Gene3D - 212 269 IPR013088 GO:0006355|GO:0008270
Gma04g00882 309 MobiDBLite consensus disorder prediction 185 209 - -
Gma04g00882 309 Pfam tify domain 88 119 IPR010399 -
Gma04g00882 309 ProSiteProfiles GATA-type zinc finger domain profile. 215 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00882 Gma-Chr4 8764133 8769316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00882 87 270 Tify Gene Family AT4G24470 67.204 2.03e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma04g00882 CCT 2.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00882 - - gmx:100809517 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01821 14 48694948 48699899 Gma04g00882 04 8764133 8769316 PCT
Gma02g02045 02 46061865 46066660 Gma04g00882 04 8764133 8769316 PCT