Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00880 ATGCCTCACAGAACCACATACATTTTCCCGCGTCAGTTTCCGGAGCGAGGAGGGTTGGATGAATCTTCCAAACAGCTATTAGATCACGAGAAAAAAAAGATCGTCAACTCAATCAAACATGACACGTTTACCGCCGAAAGCGACCCTCCCAAAAAGTCACCTCCAACCAAAGACAACGACGTTGTCGTTCTCTCCTCCGCCAAGCACTCCGCCGTCTCCTACCTCTTCGCTGCCGGCGACAAGTTCCGAACAAAGCACAAGCAAATCGCCGCGTTCTCCGATTGGCTGACCGACAAGAAAGCAAGCAGCCAGTGCAGCCCCCGCCACCACGACCGCGACCTACTTCTTCCGCCGGAAACCACCGTCAAGGATGCCGCCGTTGACCAGAGATTTGACCGTCAGGTTTCGCTTCCGCGGCTATCGAGCGGGAGCAGCTATGCGGGGAGCTTGTTTTCGGGGACGACGTTGGATTGCAATTTCTCCAGCGACATTAAGGAGGAAACGTCGTCGTCTCGCACGCTCACTACTATTCCCGCGCCGAGGCACAAGAATGAGGAGGAGGAGGAGGAACAGAGCACCAAGAAGTTGGCGAAGAAGTCGAAAGAAAGCTACATCTTGCAACTCACGTTAGCGAAGAGGCTCACTTGCTTGGCTACCCTCGTCACCGAACCTGTTCTCACTCCTGGAACCGAAACCTGGGATGCCGAATCCGTTTCTTATCGCCTATGGGTGAGTGGGTGTTTATCATATACGGACAAGATATCTGATGGGTTTTATAACATATTGGGGATGAATCCGTATCTGTGGGTGATGTGCAATGATGTGGAGGAAGGTAGAAGAATACCTACTTTGATGGCGCTAAAAGCGGTTGAGCCCAGCGACACTTGTATGGAGGTGGTGCTTGTTGATAGACGCGAGGATTCTCGCTTGAAGCTGCTTCAGGATAAAGCGCAAGAGTTGTATTGTGCTTCTGAGAACACGTTGCTGTTGGTGGAACAACTAGGGAAACTTGTTGCTATTTATATGGGGGGTATGTTCCCGGTTGAGCAAGGGGATCTTCACAAGCGCTGGAAGTTGGTTAGTAAGAAGTTGAGAAATTTTCACAAGTGTGTTGTGCTTCCCATTGGCAGCCTGTCTAGTGGGCTTTGTAGGCATCGGGCTGTTCTTTTTAAGAGATTGGCAGATTATATTGGGTTGCCCTGTCGCATAGCTCGAGGTTGCAAGTACTGTGTTGCAGATCATAGATCTTCTTGCCTAGTCAAAATTAAAGATGACAAGCAGCTCTCAAGGGAATATGTGGTTGACCTAGTTGGGGAACCAGGAAATGTCCATGGGCCAGATTCCTCAATTAATGGAGCATATGTTTCTTCAATGCCTTCCCCGTTTCAAATTTCTCATTTAAAAGAATCACAATCACCCTATATGGATGACACAGCAAGTTCTATAAGTTCCAATCACAGACCTGTTAATCCTGAAAGTCTTCCATATTCAGGCTCTGAACAGAATGATCAACAACTTAATGAAACTGATTTGCTGAAAAGTCACAAGGGCTCCATTTATGCTTCAGTTGATCAAATCTGTGAAGGAACAGAACCATCTCTAATTCCTTTTGGTTTAGAAGGGAATGATGAGGAATGTGCAGTTCTTAGTTCAGTTTTGCCTACCATCCATGAAGATGTTTCAAAATCTCTTCATCCAGCCATTGAAGCATCATTACATGAATATCCAAGGCTTAGTGAAGATGTAGTGCAAGAAACTTCCCACAACGAGATAATTGTAAATGGAAGTTCTGTGGTGAAAAGTACTTTCCAGCAATCTATGCTTGGTTCATCCTGCCAGTCAGAACTGAAACAGGTAGGCATTAGAATTGAAAACCAGGGTTGTTTACCTGCTGCTGGGAATATTCCAAGATATGTAAATCTTGAACCGTCACTTGCAATGGATTGGCTTGAGATATCATGGGATGATTTAAGAATTAAAGAGCGTGTTGGTGCTGGCTCATTTGGGACAGTGTACCGTGCTGAATGGCATGGATCAGATGTTGCAGTCAAGGTTTTAACAGTTCAGGATTTCCATGATGATCAGTTGAAGGAATTTCTGAGAGAGGTTGCAATAATGAAACGAGTTCGTCATCCAAATGTGGTGCTCTTTATGGGGTCTGTTACAAAACGCCCCCATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATACCGCCTGATACACAGACCAGCATCTGGTGAAATTCTGGATAAGAGGAGGAGATTACGGATGGCTTTGGATGTGGCTAAAGGAATCAATTATCTCCACTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAATCCCCAAACTTGCTAGTGGATAAAAATTGGACTGCGAAGGTTTGTGATTTTGGATTGTCCAGGTTTAAGGCAAACACTTTCATACCGTCCAAATCTGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCTTCGCGGTGAACCCTCCAATGAGAAATCTGACGTATTCAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCATGCAACAACCATGGAATGGACTTAGCCCTGCCCAGGTGGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTTGCTATCCCTCCAAACATCTCCCCGGCTTTGGCCTCCCTCATGGAATCTTGTTGGGCAGATGACCCTAGTGAACGCCCATCTTTTGGTAGCATAGTGGACTCACTAAAGAAGCTGGTAAAATCTCCAGCAGAGGTGATAAAGATGGCGGATTCATAG 2784 0.463 MPHRTTYIFPRQFPERGGLDESSKQLLDHEKKKIVNSIKHDTFTAESDPPKKSPPTKDNDVVVLSSAKHSAVSYLFAAGDKFRTKHKQIAAFSDWLTDKKASSQCSPRHHDRDLLLPPETTVKDAAVDQRFDRQVSLPRLSSGSSYAGSLFSGTTLDCNFSSDIKEETSSSRTLTTIPAPRHKNEEEEEEQSTKKLAKKSKESYILQLTLAKRLTCLATLVTEPVLTPGTETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEGRRIPTLMALKAVEPSDTCMEVVLVDRREDSRLKLLQDKAQELYCASENTLLLVEQLGKLVAIYMGGMFPVEQGDLHKRWKLVSKKLRNFHKCVVLPIGSLSSGLCRHRAVLFKRLADYIGLPCRIARGCKYCVADHRSSCLVKIKDDKQLSREYVVDLVGEPGNVHGPDSSINGAYVSSMPSPFQISHLKESQSPYMDDTASSISSNHRPVNPESLPYSGSEQNDQQLNETDLLKSHKGSIYASVDQICEGTEPSLIPFGLEGNDEECAVLSSVLPTIHEDVSKSLHPAIEASLHEYPRLSEDVVQETSHNEIIVNGSSVVKSTFQQSMLGSSCQSELKQVGIRIENQGCLPAAGNIPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGSVTKRPHLSIVTEYLPRGSLYRLIHRPASGEILDKRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTAKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVFSFGVILWELVTMQQPWNGLSPAQVVGAVAFQNRRLAIPPNISPALASLMESCWADDPSERPSFGSIVDSLKKLVKSPAEVIKMADS 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00880 927 MobiDBLite consensus disorder prediction 169 196 - -
Gma04g00880 927 MobiDBLite consensus disorder prediction 37 55 - -
Gma04g00880 927 SUPERFAMILY Protein kinase-like (PK-like) 637 910 IPR011009 -
Gma04g00880 927 MobiDBLite consensus disorder prediction 179 196 - -
Gma04g00880 927 SMART serkin_6 657 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g00880 927 MobiDBLite consensus disorder prediction 1 25 - -
Gma04g00880 927 Coils Coil 182 202 - -
Gma04g00880 927 Gene3D Transferase(Phosphotransferase) domain 1 736 924 - -
Gma04g00880 927 Gene3D Phosphorylase Kinase; domain 1 650 734 - -
Gma04g00880 927 PRINTS Tyrosine kinase catalytic domain signature 731 744 IPR001245 GO:0004672|GO:0006468
Gma04g00880 927 PRINTS Tyrosine kinase catalytic domain signature 772 790 IPR001245 GO:0004672|GO:0006468
Gma04g00880 927 PRINTS Tyrosine kinase catalytic domain signature 838 860 IPR001245 GO:0004672|GO:0006468
Gma04g00880 927 PRINTS Tyrosine kinase catalytic domain signature 882 904 IPR001245 GO:0004672|GO:0006468
Gma04g00880 927 ProSitePatterns Protein kinases ATP-binding region signature. 663 684 IPR017441 GO:0005524
Gma04g00880 927 CDD STKc_MAP3K-like 663 911 - -
Gma04g00880 927 ProSiteProfiles Protein kinase domain profile. 657 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g00880 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672|GO:0006468
Gma04g00880 927 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 111 924 - -
Gma04g00880 927 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 111 924 - -
Gma04g00880 927 MobiDBLite consensus disorder prediction 469 504 - -
Gma04g00880 927 Pfam Ethylene-responsive protein kinase Le-CTR1 235 443 - -
Gma04g00880 927 MobiDBLite consensus disorder prediction 37 59 - -
Gma04g00880 927 Pfam Protein tyrosine and serine/threonine kinase 657 911 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00880 Gma-Chr4 8674597 8681650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00880 1 925 MAP Kinase Kinase Kinase AT4G24480 56.911 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gma04g00880 PK_Tyr_Ser-Thr 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00880 - - gmx:100808435 1850.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00880 04 8674597 8681650 Gma06g00869 06 7973800 7979701 GST
Gma14g01820 14 48628564 48635197 Gma04g00880 04 8674597 8681650 PCT
Gma14g00232 14 1969968 1975510 Gma04g00880 04 8674597 8681650 PCT
Gma02g02709 02 52815792 52820634 Gma04g00880 04 8674597 8681650 PCT