LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma04g00864	ATGGTCTGTCCGGGTTCAACGAAATTGTCTCATGACGTTAGGTTCTACAGTAATACTGGATTCTGTAGTTTCCATCATAACCGGATGGGGGTCGGTCGATTACATTTGGTCACCTTAAATCTTTCACCATGTAGTTTGAAGCAAGACTCTTCAGCACTCCATCTTTTAAGTAGACCACATGCCCCAATAAGGCATGTGCCTTCCAGATGTAATGTTTTCATTTGTCAGTCTGTCCTAATACCAGGTGGAGGAAGTGGAACTCCACTGATGAAATCTGCTAGTGTTATTTTAACAAGGTCATATGATGCTCTACAAGGAAACCCTACTTTTCTTCAATTGATCCCAGCTATTGGTATCATTGCCTTTGCTGTTTGCGGTCTTGAGCCACTCCTTCGTCTCAGCAGGGTTTTGTTCCTTCAGAGTACTGACAGTAGTTGGAAGAAAAGTAGTTCGCGATATATCATGACATCTTATTTTCAGCCATTGCTGTTGTGGACTGGGGCAATGCTGGTATGCAGGGCATTAGATCCACTAGTCCTACCATCTGAGTCCAGCCAGGTTGTGAAGCAGCGGCTGCTGAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCCTACTGTTTATCAAGCTTAATTCAACAAGCACAAAAATTCTTTCTGGAGGGAAATGATTCCAGTGGTGCAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAGTATATACTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGGTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTAGCAGGTCGTGAGATATTTACAAACTTTCTTTCGAGCATAATGATCCATGCAACTCGGCCATTTATTGTGAACGAGTGGATTCAAACGAAGATTGAAGGATATGAGGTTTCTGGCACAGTTGAGCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGCGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATGTTGTGAGAAATCTGAGCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGCAAGGTTTTGTCTAAAAATCCTCAAGTAGAGCAGCAAAAATTACACCGAAGGGTTTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAGGAGTATCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTCGTCAGTCATCATCGAGCCAGGCTAGCCACTCCCATCCGCACTGTTCAGAAAATATACAGTGAGGCTGACTCAGAAAATATACCCTTTGGGGACACCATTTTCACTCGATCTAGTGCGGGAAATCGCCCATTCCTACTGATAGAACCACTATATAAAGTTAATGGTGAAGATAAAACTAAGCCTTCAACACGTTCAACTCGTGCAAGTGAGGAAAAAGATTTCAAGATTAATGAAACCATGGCATCTGACACCAAAGAAGATGAGAACTTTGCAGCAACATTAACCTCCTCACCTGATGTAAATTCCAAGGATAAATCCAAGTCACTGTCTGAAGCCCAGCCAAAAAAGGAAAATGCAGTAGATGCAGGAAAGGGACCTACAGTTCCTGTATCGAAAAACCTTGTTCAAAGTGCTGCGCCTGAAACCTCTCCTGTTACTTCCCACGAGATCAATTCTGCAACTTCTTCGCAATCAAAACAAGATGAAGAGAAATCTTCTGTCCCTCTGTCATCAGTTAGGCCATCCTTGGAAGAGAACATTCTACTCGGGGTTGCCATAGAAGGCTCAAAACGTACTCTTCCAATTGAGGAAGAAATGACTCCATCTCCTATGCCTGCAGAGTCACAAGAATTTGCTGTTCAACGGAATGGGGGTGGACCTCCTGCTAGTAAGGATAAGAAGGATGGCCAGTCTTCATTTCCAACTAGTAAACAGAATGACTAA	2046	0.4247	MVCPGSTKLSHDVRFYSNTGFCSFHHNRMGVGRLHLVTLNLSPCSLKQDSSALHLLSRPHAPIRHVPSRCNVFICQSVLIPGGGSGTPLMKSASVILTRSYDALQGNPTFLQLIPAIGIIAFAVCGLEPLLRLSRVLFLQSTDSSWKKSSSRYIMTSYFQPLLLWTGAMLVCRALDPLVLPSESSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEGNDSSGARNMGLDFAGKAVYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFTRSSAGNRPFLLIEPLYKVNGEDKTKPSTRSTRASEEKDFKINETMASDTKEDENFAATLTSSPDVNSKDKSKSLSEAQPKKENAVDAGKGPTVPVSKNLVQSAAPETSPVTSHEINSATSSQSKQDEEKSSVPLSSVRPSLEENILLGVAIEGSKRTLPIEEEMTPSPMPAESQEFAVQRNGGGPPASKDKKDGQSSFPTSKQND	681

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma04g00864	681	SUPERFAMILY	Sm-like ribonucleoproteins	282	352	IPR010920	-
Gma04g00864	681	MobiDBLite	consensus disorder prediction	545	559	-	-
Gma04g00864	681	MobiDBLite	consensus disorder prediction	498	526	-	-
Gma04g00864	681	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC	1	674	-	-
Gma04g00864	681	MobiDBLite	consensus disorder prediction	571	614	-	-
Gma04g00864	681	PANTHER	OW CONDUCTANCE MECHANOSENSITIVE CHANNEL	1	674	IPR045042	-
Gma04g00864	681	Gene3D	-	195	296	-	-
Gma04g00864	681	MobiDBLite	consensus disorder prediction	527	544	-	-
Gma04g00864	681	Pfam	Mechanosensitive ion channel	239	446	IPR006685	GO:0016020\|GO:0055085
Gma04g00864	681	Gene3D	-	298	353	IPR023408	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma04g00864	Gma-Chr4	8527328	8533798	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma04g00864	9	654	Mechanosensitive Ion Channel Family	AT1G58200	56.231	0.0	745

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma04g00864	K22047		-	gmx:100796022	1325.07

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma04g00864	04	8527328	8533798	Gma06g00853	06	7848603	7860480	GST

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