Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00860 ATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAAGTAACATTTTCTAAGAGGAGGCGAGGGCTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAACGCCAGTATAAATGACATAATTACAATTTATAATACGCACTCCCATGGCGTCAACAAATTGGGCAAGCCATCACTAGAATTGCAG 261 0.4253 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSNASINDIITIYNTHSHGVNKLGKPSLELQ 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00860 87 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma04g00860 87 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 85 - -
Gma04g00860 87 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma04g00860 87 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma04g00860 87 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 85 - -
Gma04g00860 87 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gma04g00860 87 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gma04g00860 87 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma04g00860 87 CDD MADS_MEF2_like 12 75 IPR033896 GO:0000977|GO:0045944
Gma04g00860 87 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma04g00860 87 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma04g00860 87 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00860 Gma-Chr4 8476338 8482346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00860 1 87 MADS-box Gene Family AT2G22540 66.667 1.47e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma04g00860 SRF-TF 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00860 - - gmx:100801525 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00860 04 8476338 8482346 Gma06g00849 06 7820706 7826561 GST