Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00853 ATGGAATTTGACGAGCACGAGGACCAAGAGGAAGAGGAGGAAGAGGAAATGGGATTCTCAGTGGCGGCTGCGAGTTACGACTCGCTGGGAAACGCGGCGGTGAGGTCTAAAATGAGCGGCGGCGAGGGAGTTGCGGTCACCGGGAATTCTGGTCGGAAAGGGACGCTGAGATACAGAGAATGTCAGAAGAACCACGCCGTCAGCATTGGAGGCCAAGCCGTCGACGGCTGCTGCGAGTTTTTGGCCGCCGGGGAGGAAGGTACGCTGGAGGCCGTAATTTGCGCCGCCTGCAACTGCCACCGTAATTTCCACCGCAAGGAGATCGACGGCGAAACCAGCCCTTACCGGCAGCGTTCGCAGCCGCAGCCTCAGCCTCTGCACCCTCAGTACCACCACCAATTCTCCCCTTACTACCACCGCGCCCCACCACCTTCGGCTGCCGGGTACCTCCACCACCACCTGGTAACTCCTCCGGTGTCGCAGCACCGGCCCTTGGCTCTGCCACCGTTAGCTTCCGGAGGAGTGTTCAGTAGGGAGGAAGAAGACATGTCAAACCCCAGTTCCAGCGGCGGTGGTGGCGGTTTTAGTGGTGGTGGAGGTGGTAGCGGGAGTGGAACGAAGAAGAGGTTTAGGACGAAGTTCACGCAGGAGCAGAAGGATAAGATGCTTGCATTTGCGGAGGAGCTAGGGTGGAGAATTCAGAAGCATGACGAAGTTGCTGTGGAACAATTCTGCGCTGAAACTTGCGTCAAGAGACATGTGCTCAAGGTTTGGATGCACAATAACAAACACACTCTTGCTAATTCTGAGCAACGTTCAGCTGGGAATGGATCGAACCACTTGAACAGCACAACAATAATTGAGAATTCTCAATTATCCTAA 882 0.5578 MEFDEHEDQEEEEEEEMGFSVAAASYDSLGNAAVRSKMSGGEGVAVTGNSGRKGTLRYRECQKNHAVSIGGQAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGETSPYRQRSQPQPQPLHPQYHHQFSPYYHRAPPPSAAGYLHHHLVTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGFSGGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEELGWRIQKHDEVAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSTTIIENSQLS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00853 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 267 - -
Gma04g00853 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Gma04g00853 293 MobiDBLite consensus disorder prediction 160 208 - -
Gma04g00853 293 MobiDBLite consensus disorder prediction 114 129 - -
Gma04g00853 293 Pfam ZF-HD protein dimerisation region 56 108 IPR006456 -
Gma04g00853 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 267 - -
Gma04g00853 293 MobiDBLite consensus disorder prediction 110 142 - -
Gma04g00853 293 MobiDBLite consensus disorder prediction 1 18 - -
Gma04g00853 293 MobiDBLite consensus disorder prediction 267 293 - -
Gma04g00853 293 SUPERFAMILY Homeodomain-like 195 265 IPR009057 -
Gma04g00853 293 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Gma04g00853 293 Gene3D - 193 270 - -
Gma04g00853 293 MobiDBLite consensus disorder prediction 1 22 - -
Gma04g00853 293 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 207 263 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00853 Gma-Chr4 8391932 8393244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00853 9 266 ZF-HD Transcription Factor Family AT4G24660 49.807 3.11e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma04g00853 ZF-HD_dimer 1.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00853 - - gmx:100794438 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00853 04 8391932 8393244 Gma04g00853 04 8391932 8393244 ECH
Gma04g00853 04 8391932 8393244 Gma06g00842 06 7773794 7775591 GST
Gma14g01791 14 48217773 48221303 Gma04g00853 04 8391932 8393244 PCT
Gma02g02010 02 45585873 45592092 Gma04g00853 04 8391932 8393244 PCT
Gma04g00853 04 8391932 8393244 Gma14g01791 14 48217773 48221303 PCT
Gma04g00853 04 8391932 8393244 Gma02g02010 02 45585873 45592092 PCT