Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00852 ATGGGTTTTGGCGCCCCATGTGTTCCCTCACCCATCCCAATTCTCATGGGCTACCTCTCTTGCAATGCCCACTCCTCAATCGCCACCTGCCACCCCCACCACAAACCCCTCGCCGCAACACCAATCCGACACTTTCCCTACGCCGACATCGTCGCCGCCGCCAACGGCTTCTCCTCCGACACCTTCCTGGGCCGAGGCAGCCACGGCAGAGTCTACAGAGCCACCCTGGACGCCGGCAAGCTCCTCGCCGCCGTCAAAACGACCAAACTTGTCGCCACCAGCACCTCTAAAAACCACGCCACCAAATGCACCGGCTGCGGCAACTGCACCAGCCCCGCCGAAAACGAGATCGAGATCCTCTCCCAAATCCCCAGCCCCCGCCTCGTCAACCTCATCGGCTTCAGCACCGACCCAAACGGCAACAAATTACTCGTCGTCGAATACATGCCCAACGGCTCGCTCCACGATCTGTTACACTCCGTTAAAAAACCGCCCGGTTGGAACCGTAGGGTCCGGTTCGCGCTTCAGGTCGCAAAAGCGGTTCGCGAACTACACTCTTCCAACCCTCCCGTTATTCACCGTGACGTTAAGTCTTCCAATGTTTTAATCGATCAAGAATGGAACGCCAGGCTCGGTGACTTCGGCTTGGCCTTAAGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACTCCCCCCGCGGGGACTTTAGGGTACCTCGACCCGTGCTACCTTGCGCCGGAGGATCTTAGTGCTAAGAGCGACGTCTTCAGCTTCGGAATCTTGCTCTTGGAAATAATCAGTGGAAGAAACGCTATTGATGTTAACTTTAGCCCTCCGTCTGTGGTGGACTGGGCGGTGCCGTTGATTAAGATCGGCGACTTTGCCGGAATCTGCGACCGCCGAATCGGCCCTCCGCCGGACCCTGCCGTGGTGCGGCAGCTCGCAGTGCTGGCCGCCAGATGCGTGAGGTCGACGGCGGAGAAGCGGCCGTCGATGGCGGAGGTGGTGGAGTGTCTTAATCTGGCGAGGAAGAGGATCCGCGCGTCACCGATTTGGAACAGTCTGCGGCGGCGCGTGGCACGCGTCGAGAGCGCGCTTCCGGTGTTTGACGGCAATGATTGTGATGGGAGTGAGGAATTTGTGAGGATGGTGAATAAAGGTGGGAGTGGGAGTAAGAGGAACGGGAAAGTATCGAGTGTGTCGCGTGTAGGGTATGGGAGTGAGGCCTCCAATAATAATAAAGTGATGAGGTCAAAGTCCATTGGTTCTGGTTCGTTGAAAGGGAGTTGGGTCAAAATGCAACCGCACCAAACGGAGAATGAAGGGTTTGGGAGAAGGAAGGTGAAGCTAAAAAGGTCAAAGTCTATGGGGGTTTTGCAAGGTTCGCTACTGATACATTATGGCAGCGAGAATGATGTAGTAATTCGTTCGGGAATGGCCAAGTTGGTTGTTAAGGATAAGTTGGAAAAACCGTTAGTGAAATCGCGTTGA 1491 0.5614 MGFGAPCVPSPIPILMGYLSCNAHSSIATCHPHHKPLAATPIRHFPYADIVAAANGFSSDTFLGRGSHGRVYRATLDAGKLLAAVKTTKLVATSTSKNHATKCTGCGNCTSPAENEIEILSQIPSPRLVNLIGFSTDPNGNKLLVVEYMPNGSLHDLLHSVKKPPGWNRRVRFALQVAKAVRELHSSNPPVIHRDVKSSNVLIDQEWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNFSPPSVVDWAVPLIKIGDFAGICDRRIGPPPDPAVVRQLAVLAARCVRSTAEKRPSMAEVVECLNLARKRIRASPIWNSLRRRVARVESALPVFDGNDCDGSEEFVRMVNKGGSGSKRNGKVSSVSRVGYGSEASNNNKVMRSKSIGSGSLKGSWVKMQPHQTENEGFGRRKVKLKRSKSMGVLQGSLLIHYGSENDVVIRSGMAKLVVKDKLEKPLVKSR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00852 496 Pfam Protein tyrosine and serine/threonine kinase 61 339 IPR001245 GO:0004672|GO:0006468
Gma04g00852 496 SMART serkin_6 57 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g00852 496 PANTHER OS01G0750732 PROTEIN 15 490 - -
Gma04g00852 496 Gene3D Phosphorylase Kinase; domain 1 20 148 - -
Gma04g00852 496 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Gma04g00852 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Gma04g00852 496 Gene3D Transferase(Phosphotransferase) domain 1 149 354 - -
Gma04g00852 496 PANTHER - 15 490 - -
Gma04g00852 496 SUPERFAMILY Protein kinase-like (PK-like) 36 339 IPR011009 -
Gma04g00852 496 ProSiteProfiles Protein kinase domain profile. 57 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00852 Gma-Chr4 8381640 8383439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00852 43 350 Receptor kinase-like Gene Family AT3G59420 39.297 4.17e-66 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma04g00852 PK_Tyr_Ser-Thr 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00852 - - gmx:100799382 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00852 04 8381640 8383439 Gma04g00852 04 8381640 8383439 ECH
Gma04g00852 04 8381640 8383439 Gma06g00840 06 7758936 7760648 GST
Gma02g02011 02 45609162 45610703 Gma04g00852 04 8381640 8383439 PCT
Gma04g00852 04 8381640 8383439 Gma02g02011 02 45609162 45610703 PCT