Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00833 ATGCCGTCACTGGGGGTGCAACTTACTATTCAAGATAATCATGTGGTGATGGAGAATGGCATGCTAAAAGTCACCTTATCAAATCCTGAGGGAATTGTGACTGGAATACAGTATAATGACATAGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACAAGTGGCACATTTGATGTCATCAAGGGAACAACTTTCAAAGTTATGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACGTTTCTCTCGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCGTAATGCTTCGTGGTTCTTCCGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGGACTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTACCAGATGACCGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAGGCAGTTCTACTAGTAAATCCCATCGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGATAGCCAAGTTCATGGATGGATCTGCATGGATCCCGCAGTCGGATTCTGGCTAATTACGCCCAGCAATGAGTTTAGATCTGGTGGACCCCTCAAACAAAACTTAACTTCCCATGTGGGGCCTACCACTCTTGCTGTGTTTCTGAGTGCCCATTATAGCGGAGAGGATCTGGTGCCCAAGTTCTATGCTGGTGAGGCCTGGAAGAAAGTTTTTGGTCCTGTTTTCATTTATTTGAATTCTCCCTATGATGGAAGTCACCCCCTTAAGCTATGGGAAGACGCTAAACTACAGATGTTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGAATTTCGCCAAGTGGGACGAGCGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGACTATGTATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCGGGAGACGTGGGGTCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCTCCATCAGCAATATACGTGCAGGAGACTATAATGTGTTCGCATGGGTACCTGGTTTTATTGGTGACTACAAATATGACATAGTTATGAAGATAACAGAAGGTTGTGACATCGACCTTGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAATTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTCTATTTTAACCATCCTGACAAGTTTAGGCAATATGGGTTGTGGGAGAGATATGCAGAATTATACCCAGACAAAGACTTGATCTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAACACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAACGTGAACAAAAGCAGTAGCTATAAACTGAGAGTTGCTTTGGCATCAGCAGCATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGGCACCTCGTCCTCTATTTTCAAGTGGGTTGATTGGAAGGGATAACTCAATCGCTAGGCACGGGATTCATGGACTTTATTGGCTTTACAATGTAGACATGCCGGGAACTCAACTAGTTGAAGGAGATAATACCATCTTTTTGACACAGACCAGAGGCAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGTAAACTCATGTTGCATTATGCTCTAATTAAAACCCTACAATTATCCCTTGATGATTTGAGAGCATTGGAGCATAGTTGCAGATATAAAGGAGTTATGCAGATCTCATTCATCAAAATAAAGAAAAAGAGTGATGCAGATAAATCGAAAAGGACAAGGAATTCGGAAGCAACGTTTGTCATCAAGCAAAGTCCAAAGCGCGCAAATCCTATGCAGAAGACCATGGACTTCAGTATTCGCTTCCTGTTCTTGATGCTGCAATTCCTCATAGTTCTGGGTTGTGCTACTAAACCAGGGGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAAGTTAACTTATCAAACCCTGAAGGAATTGTCACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGACGAATCTAACAGAGGGTACTGGGATATTGTATGGGATGAAGGCGGAAAAAAAAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACGAATTTTACGGTGATAGTGGAAAGTGAGGAACAAGTAGAGCTATCTTTCTCCAGAACATGGAATGACTCTCTTGAGGGGAAGCTTCCACCACTCAATATTGATAAAAGGTTTATAATGCTTAGTGGTTCATCTGGATTTTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTTGACAATACTAGGATCGCATTCAAGCCTAGGAAAGACAAGTTCCACTACATGGTTGTGGCGGACAACAGACAAAGATTTATGCCTCTGCCTGATGACCGCTCACCCCCAAGAGGTCAAGTTCTAGCTTACCCAGAGGCTGTGCGCCTTGTTGACCCCCTCGAGCCTGAATTCAAAGGAGAGGTAGATGACAAATATCAGTACGCGTGTGAGAGCCGATACAACCGTGTTCACGGTTGGATATGCATTGATCCAGTGAATTCCACTGGATTCTGGCTAATTACGCCAAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATATCTTACTTCTCACGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGGCGGATCTGATCATGCAATTTGGGCCCAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTTATATACCTTAATTCTCTATCTAACGGGTTTAGCCCTATCGGCCTATGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATACATTTCCAGCTTCTGAGGACTTTCTCTCATCTGACCAGCGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCATCCCAGTCAGCGGTGCTTATGTGGGACTAGCAGCCATAGGAGAGGTTGGATCTTGGCAGAGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACATACGCCCTGGAGGCTATAATCTCTACTCGTGGGTCAATGGATTCATTGGTGATTATCAATTCGATAGCGTCATCTACGTAACTTCAGGTTGTGAAACTAATGTGGGTGAGCTTGTTTATGAGGCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAACCCCATGTGCATTAACAGACTCTATGTCAACCATCCAGACAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGAGTTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGACTACAGAAAGGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAAGACAATGGCACTTACATAGGAACCACATGGCAAATTAATTTCAAGCTTGATAGTGTGAATACCAACGGAACCTACACATTGCAAGTGGCTCTGGCATCTGTGCATTCTGCTGAATTAGAGATTCGGATAAACAATTTAGAAGCAAATCCACCTTTATTTTCAAGTGGAGTGATTGGAAAAGAGAATACTATAGCTAGACATGGAATTCACGGTCTCTACTGGCTATTCAGCATTCATATACAAGGCACACTTCTTGTGCAGGGAAACAATACCATCTTTCTAACACAAACAAGAGACACTAGTCCTTTTATAGGAATTATGTATGACTATATTCGTCTAGAATACAAACGGTGA 4110 0.4275 MPSLGVQLTIQDNHVVMENGMLKVTLSNPEGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVMVENEDQVELSFTRTWDVSLEGKLVPLNIDKRFVMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFYAGEAWKKVFGPVFIYLNSPYDGSHPLKLWEDAKLQMLVEVQSWPYSFPESENFAKWDERGNVSGRLLVRERYINDDYVSAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVFAWVPGFIGDYKYDIVMKITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYFNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKSSSYKLRVALASAALSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYNVDMPGTQLVEGDNTIFLTQTRGNGPFQAIMYDYIRLEGKLMLHYALIKTLQLSLDDLRALEHSCRYKGVMQISFIKIKKKSDADKSKRTRNSEATFVIKQSPKRANPMQKTMDFSIRFLFLMLQFLIVLGCATKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDIVWDEGGKKRTKKGAKGKGRFDRMEATNFTVIVESEEQVELSFSRTWNDSLEGKLPPLNIDKRFIMLSGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKDKFHYMVVADNRQRFMPLPDDRSPPRGQVLAYPEAVRLVDPLEPEFKGEVDDKYQYACESRYNRVHGWICIDPVNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGADLIMQFGPNEPWKKVYGPIFIYLNSLSNGFSPIGLWEDAKQQMVNEVESWPYTFPASEDFLSSDQRGKVEGRLLVRDRYISDAFIPVSGAYVGLAAIGEVGSWQRECKGYQFWTITDDKGYFSIINIRPGGYNLYSWVNGFIGDYQFDSVIYVTSGCETNVGELVYEAPRDGPTLWEIGIPDRSAAEFYVPDPNPMCINRLYVNHPDRFRQYGLWERYAELYPNEDLVYTVGISDYRKDWFFAQVNRKKDNGTYIGTTWQINFKLDSVNTNGTYTLQVALASVHSAELEIRINNLEANPPLFSSGVIGKENTIARHGIHGLYWLFSIHIQGTLLVQGNNTIFLTQTRDTSPFIGIMYDYIRLEYKR 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00833 1369 Pfam Rhamnogalacturonate lyase family 731 935 IPR010325 -
Gma04g00833 1369 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Gma04g00833 1369 Gene3D - 333 420 - -
Gma04g00833 1369 Gene3D - 1065 1165 - -
Gma04g00833 1369 SUPERFAMILY Starch-binding domain-like 372 421 IPR013784 GO:0030246
Gma04g00833 1369 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 665 1369 - -
Gma04g00833 1369 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gma04g00833 1369 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 633 - -
Gma04g00833 1369 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 665 1369 - -
Gma04g00833 1369 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Gma04g00833 1369 SUPERFAMILY Galactose-binding domain-like 1174 1367 IPR008979 -
Gma04g00833 1369 SUPERFAMILY Starch-binding domain-like 1067 1165 IPR013784 GO:0030246
Gma04g00833 1369 CDD RGL4_M 1068 1167 IPR029413 -
Gma04g00833 1369 CDD RGL4_C 445 632 - -
Gma04g00833 1369 Pfam Polysaccharide lyase family 4, domain III 1177 1365 IPR029411 -
Gma04g00833 1369 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Gma04g00833 1369 Gene3D - 441 632 - -
Gma04g00833 1369 Gene3D - 1175 1366 - -
Gma04g00833 1369 CDD RGL4_N 8 294 - -
Gma04g00833 1369 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 3 633 - -
Gma04g00833 1369 CDD RGL4_N 737 1028 - -
Gma04g00833 1369 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
Gma04g00833 1369 Pfam Polysaccharide lyase family 4, domain II 1091 1163 IPR029413 -
Gma04g00833 1369 Gene3D - 5 301 IPR014718 GO:0030246
Gma04g00833 1369 CDD RGL4_M 334 433 IPR029413 -
Gma04g00833 1369 CDD RGL4_C 1179 1366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00833 Gma-Chr4 8140617 8153621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00833 1 633 Polysaccharide Lyase AT1G09890 71.339 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00833 K18195 - gmx:100786488 1442.94