Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00832 ATGGTGGTGATGGATAATGGCATAGTCCAAGTTACCTTAACAAATCCAGATGGAATTGTCACTGGGATACGATATAATGGTGTTGACAGTTTGCTTGAAGTTCTCAACAAGGAGACTAATAGAGGGTATGTGCCCCTAGCGATGAGTAATTGTGAATTGTTATCTCTCTCACACGTGTGCGGCTGTGCGCGAGCTCACGTGCACAGAGTAGTCATTCTTCTGAAAATATTCATAATGCTCCGTGGTTCATCAGGCTTCTACCCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATATTAGTGAAACAAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCAAAGGGTTATGCCTTTTCCTGAAGATCGGTTACCAGGAAGATGCCAAACCTTGGGTTACCCAGAAGCTGTCCTGCTAGTGGATGACAAGTATCAGTATTCATGTGTAAACATGGATAATCGAGTCCATGGGTGGATATCTTTCAGTCCGCCAGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCGCATGTAGGCCCTACCGCGCTTGCAATGTTTCTTAGTGGTCACTATGTGGGACAAGATTTGGTGCCTAAATTTAGAGGTGGTGAATCATGGAAGAAGGTTTTTGGTCCTGTATATATGTATCTTAATTCTGGAGCAGTTGGTGACGACCCACTTGGGCTATGGGAGGATGCAAAAATACAGCCATATTCTTTCCCAGCTTCAGAGGATTTTTTAAAATTGGATCAATGGGGCAACGTCAGTGGCAGATTACTTGTCTTTGACAGGTACATCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGTTTAGCCCCACCTGGAGATGCAGGGTCATGGCAAAGGGAATGCAAGGTTCCTGGTTTTGTTGGGGACTACAAATTTGGTGATTTGATGAAGATAACATCAGGTTCTTACATTGAATTGGGTGAACTTGTATATGAGCCTCTACGGGATGGTCCCACATTGTGGGAAATAGGTATTCCGGATAGATCTGCTGCAGAATTTTATGCTCCTGATCCCAACCCACAACATATTAATAAACTTTTTATCAACCATCTAGACAGGTTCGGGCAGTATGGATTGTGGGATGGGTATTCAGAATTGTATCCTGATGGAGATTTGGTTTACACAATTGGTGTTAGTGACTATACGAAGGATTGGTTTTATGCACAGGCTCCAAGGAAAAAACAGGATAACACTCTTCAATGA 1314 0.4277 MVVMDNGIVQVTLTNPDGIVTGIRYNGVDSLLEVLNKETNRGYVPLAMSNCELLSLSHVCGCARAHVHRVVILLKIFIMLRGSSGFYPYGIYEHLNGWPDFDISETRITFKLRKDKFQYMAMADNRQRVMPFPEDRLPGRCQTLGYPEAVLLVDDKYQYSCVNMDNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTALAMFLSGHYVGQDLVPKFRGGESWKKVFGPVYMYLNSGAVGDDPLGLWEDAKIQPYSFPASEDFLKLDQWGNVSGRLLVFDRYICTDLISANGAYVGLAPPGDAGSWQRECKVPGFVGDYKFGDLMKITSGSYIELGELVYEPLRDGPTLWEIGIPDRSAAEFYAPDPNPQHINKLFINHLDRFGQYGLWDGYSELYPDGDLVYTIGVSDYTKDWFYAQAPRKKQDNTLQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00832 437 SUPERFAMILY Galactose mutarotase-like 9 249 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gma04g00832 437 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 50 - -
Gma04g00832 437 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 50 - -
Gma04g00832 437 Pfam Polysaccharide lyase family 4, domain III 356 434 IPR029411 -
Gma04g00832 437 Pfam Rhamnogalacturonate lyase family 75 155 IPR010325 -
Gma04g00832 437 Pfam Rhamnogalacturonate lyase family 2 50 IPR010325 -
Gma04g00832 437 Gene3D - 1 263 IPR014718 GO:0030246
Gma04g00832 437 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 75 319 - -
Gma04g00832 437 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 320 436 - -
Gma04g00832 437 CDD RGL4_N 2 245 - -
Gma04g00832 437 SUPERFAMILY Galactose-binding domain-like 353 433 IPR008979 -
Gma04g00832 437 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 75 319 - -
Gma04g00832 437 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 320 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00832 Gma-Chr4 8126756 8132055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00832 2 433 Polysaccharide Lyase AT1G09910 56.126 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00832 K18195 - gmx:100814185 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00832 04 8126756 8132055 Gma04g00832 04 8126756 8132055 ECH
Gma04g00832 04 8126756 8132055 Gma06g00824 06 7566728 7579145 GST