Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00788 ATGTCGAAAATACACCTCTTCATGCTGAAGTTTCCTTTTCATTTGCTCTTGTTGCTCAGCGTCATAGTACCCTTTCAAGTAATTTCACAATCAGAAAATACCGAACAAACAATCCTACTCACCCTCAAACATGAACTGGGGGATCCACCGTCGCTCCGGTCATGGATACCGTCACCGTCGGCGCCGTGCGACTGGGCGGAGATTCGCTGCGCCGGCGGCTCCGTCACCAGGCTCCTCCTCTCCGGCAAAAACATCACCACCACCACCAAGAACCTCTCTTCCACAATCTGCAACCTCAAACACCTCTTCAAGCTCGACTTCTCCGGCAACTTCATCTCCGACGAGTTCCCAACAACGTTGTACAACTGCACCAACCTCCGGCACCTCGACCTGTCGGACAACAACCTCGCCGGACCAATCCCTGCCGACGTCGACCGCCTCGAAACGCTCGCTTATCTCAACCTCGGCAGCAACTACTTCTCCGGCGAGATACCGCCGGCCATCGGAAACCTACCGGAGCTGCAAACACTTCTCCTTTACAAAAACAACTTCAACGGAACCATCCCCAGGGAAATTGGAAACTTGTCCAATCTCGAAATCTTGGGTTTGGCTTATAACCCTAAGCTCAAACGCGCGAAAATCCCGTTGGAGTTTTCCAGGTTAAGAAAATTAAGGATCATGTGGATGACGCAGTGTAACTTGATGGGAGAGATTCCAGAATATTTCGGGAATATTCTCACGAATCTGGAACGGTTGGATTTGTCGCGGAACAACCTAACAGGGAGCATTCCTCGGAGTTTATTTTCGCTGAGGAAGTTGAAGTTCTTGTACCTCTACTATAACAGGTTGTCGGGTGTAATACCTAGTCCTACGATGCAGGGTTTGAATTTAACCGAACTTGATTTCGGTAACAACATTTTGACGGGTTCCATACCCCGAGAGATTGGAAACTTGAAGAGTTTGGTTACCTTGCACTTGTATTCGAATCATTTGTATGGTGAGATTCCCACAAGTTTAAGCCTACTTCCTAGTCTCGAGTATTTCAGGGTTTTCAACAATAGCTTGAGTGGAACACTCCCTCCAGAGCTAGGCTTGCATTCGAGGCTTGTTGTGATTGAGGTTTCAGAGAATCATCTCAGTGGTGAGTTGCCGCAGCATTTGTGTGTAGGTGGTGCTCTCATTGGTGTGGTGGCTTTTTCCAACAATTTTAGCGGCCTTTTGCCTCAATGGATTGGGAATTGTCCTTCCCTCGCCACGGTTCAGGTTTTTAATAATAATTTTTCCGGGGAGGTTCCTTTGGGTTTGTGGACTTCGAGGAACCTTTCTTCATTGGTTTTGAGCAACAACTCATTTTCCGGTCCTCTTCCTAGTAAAGTGTTTTTGAATACAACGAGGATTGAGATCGCCAACAACAAGTTCTCCGGTCCGGTATCTGTTGGGATTACTTCGGCGACAAATTTGGTGTATTTTGATGCGAGAAACAACATGCTTTCAGGTGAAATTCCGAGGGAATTGACGTGTCTTTCTCGGCTTAGTACTCTCATGCTTGATGGTAACCAACTTTCTGGTGCACTTCCATCTGAGATTATTTCATGGAAATCACTGAGTACCATCACACTCTCAGGAAACAAACTTTCTGGCAAGATCCCTATTGCTATGACTGTTCTTCCTAGCTTGGCTTACTTGGACTTGTCTCAAAATGACATATCAGGTGAAATCCCACCTCAGTTTGATAGGATGAGGTTTGTTTTTCTCAACTTGTCCTCGAACCAGCTATCTGGGAAAATCCCTGATGAGTTTAATAATCTCGCATTTGAAAACAGCTTCTTGAACAATCCTCATCTGTGTGCTTACAATCCAAACGTCAACCTTCCTAACTGCTTGACCAAAACCATGCCACACTTTAGCAATTCATCTTCAAAATCACTTGCCCTGATTCTGGCCGCCATTGTCGTTGTGTTGCTGGCCATAGCCTCCTTGGTCTTCTATACATTAAAAACACAATGGGGCAAAAGACACTGTGGGCATAATAAGGTTGCAACGTGGAAGGTCACATCATTTCAGAGGCTTAATCTCACGGAAATAAACTTCCTCTCAAGTTTGACAGACAATAACCTCATAGGAAGTGGAGGGTTTGGGAAAGTTTACCGGATTGCTACAAATCGTCTGGGTGAGTATGTTGCGGTGAAGAAGATATGGAATCGCAAGGATGTGGATGACAAGTTGGAGAAAGAGTTTTTGGCTGAGGTTGAGATCCTGGGTAATATTCGGCACTCAAATATAGTGAAGCTTTTGTGTTGTTATGCTAGTGAGGACTCCAAACTTCTTGTTTATGAATACATGGAAAATCAGAGCCTGGACAAATGGCTCCATGGAAAGAAGAAAACATCACCTTCCGGGTTAAGTTGGCCAACGAGGTTGAATATTGCCATTGGGGTTGCACAAGGTCTGTATTACATGCACCATGAATGCTCACCCCCAGTCATCCACCGAGATGTTAAGTCTAGCAATATATTGTTGGACTCAGAGTTCAAAGCTAAAATAGCAGATTTTGGTCTTGCCAAGATGTTGGCAAACCTCGGTGAACCACACACCATGTCTGCTCTAGCAGGCTCTTTTGGCTACATTCCACCAGAATATGCCTACTCGACAAAGATTAACGAGAAGGTCGATGTATATAGCTTTGGGGTTGTGCTCTTAGAGCTTGTGACAGGAAGAAAGCCTAATAAAGGAGGTGAGCATGCATGCAGCCTAGTTGAATGGGCGTGGGATCATTTTAGTGAAGGGAAGAGCCTTACCGATGCATTCGATGAGGATATCAAAGATGAATGTTATGCGGTACAAATGACGAGTGTCTTCAAATTAGCTCTCCTTTGCACTAGTTCTTTACCCTCAACTAGGCCTTCCGCGAAGGATATTTTGCTAGTTCTTCGCCAATGTTGTCATTCAGGTTCTACATGTAGAAGAGCGGGAAACGAGTTTGATATCGCTCCTCTTCTTGGTGATACAAGGTACATCTATAGTTACAAGGAGTAA 3036 0.4526 MSKIHLFMLKFPFHLLLLLSVIVPFQVISQSENTEQTILLTLKHELGDPPSLRSWIPSPSAPCDWAEIRCAGGSVTRLLLSGKNITTTTKNLSSTICNLKHLFKLDFSGNFISDEFPTTLYNCTNLRHLDLSDNNLAGPIPADVDRLETLAYLNLGSNYFSGEIPPAIGNLPELQTLLLYKNNFNGTIPREIGNLSNLEILGLAYNPKLKRAKIPLEFSRLRKLRIMWMTQCNLMGEIPEYFGNILTNLERLDLSRNNLTGSIPRSLFSLRKLKFLYLYYNRLSGVIPSPTMQGLNLTELDFGNNILTGSIPREIGNLKSLVTLHLYSNHLYGEIPTSLSLLPSLEYFRVFNNSLSGTLPPELGLHSRLVVIEVSENHLSGELPQHLCVGGALIGVVAFSNNFSGLLPQWIGNCPSLATVQVFNNNFSGEVPLGLWTSRNLSSLVLSNNSFSGPLPSKVFLNTTRIEIANNKFSGPVSVGITSATNLVYFDARNNMLSGEIPRELTCLSRLSTLMLDGNQLSGALPSEIISWKSLSTITLSGNKLSGKIPIAMTVLPSLAYLDLSQNDISGEIPPQFDRMRFVFLNLSSNQLSGKIPDEFNNLAFENSFLNNPHLCAYNPNVNLPNCLTKTMPHFSNSSSKSLALILAAIVVVLLAIASLVFYTLKTQWGKRHCGHNKVATWKVTSFQRLNLTEINFLSSLTDNNLIGSGGFGKVYRIATNRLGEYVAVKKIWNRKDVDDKLEKEFLAEVEILGNIRHSNIVKLLCCYASEDSKLLVYEYMENQSLDKWLHGKKKTSPSGLSWPTRLNIAIGVAQGLYYMHHECSPPVIHRDVKSSNILLDSEFKAKIADFGLAKMLANLGEPHTMSALAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGRKPNKGGEHACSLVEWAWDHFSEGKSLTDAFDEDIKDECYAVQMTSVFKLALLCTSSLPSTRPSAKDILLVLRQCCHSGSTCRRAGNEFDIAPLLGDTRYIYSYKE 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00788 1011 Gene3D Ribonuclease Inhibitor 189 293 IPR032675 -
Gma04g00788 1011 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Gma04g00788 1011 ProSiteProfiles Leucine-rich repeat profile. 248 270 IPR001611 GO:0005515
Gma04g00788 1011 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 16 994 - -
Gma04g00788 1011 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 994 - -
Gma04g00788 1011 ProSitePatterns Protein kinases ATP-binding region signature. 707 731 IPR017441 GO:0005524
Gma04g00788 1011 Pfam Leucine rich repeat 239 283 IPR001611 GO:0005515
Gma04g00788 1011 Pfam Leucine rich repeat 509 569 IPR001611 GO:0005515
Gma04g00788 1011 Pfam Protein kinase domain 703 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g00788 1011 PRINTS Leucine-rich repeat signature 126 139 - -
Gma04g00788 1011 PRINTS Leucine-rich repeat signature 246 259 - -
Gma04g00788 1011 SUPERFAMILY L domain-like 317 575 - -
Gma04g00788 1011 Gene3D Ribonuclease Inhibitor 392 634 IPR032675 -
Gma04g00788 1011 Gene3D Phosphorylase Kinase; domain 1 681 780 - -
Gma04g00788 1011 SUPERFAMILY Protein kinase-like (PK-like) 693 977 IPR011009 -
Gma04g00788 1011 Pfam Leucine Rich Repeat 125 144 IPR001611 GO:0005515
Gma04g00788 1011 Pfam Leucine Rich Repeat 296 318 IPR001611 GO:0005515
Gma04g00788 1011 SMART LRR_typ_2 123 147 IPR003591 -
Gma04g00788 1011 SMART LRR_typ_2 342 366 IPR003591 -
Gma04g00788 1011 SMART LRR_typ_2 318 341 IPR003591 -
Gma04g00788 1011 SMART LRR_typ_2 556 579 IPR003591 -
Gma04g00788 1011 SMART LRR_typ_2 246 270 IPR003591 -
Gma04g00788 1011 SMART LRR_typ_2 508 532 IPR003591 -
Gma04g00788 1011 SMART LRR_typ_2 171 195 IPR003591 -
Gma04g00788 1011 SMART serkin_6 701 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g00788 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Gma04g00788 1011 Gene3D Transferase(Phosphotransferase) domain 1 781 993 - -
Gma04g00788 1011 ProSiteProfiles Protein kinase domain profile. 701 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g00788 1011 Gene3D Ribonuclease Inhibitor 294 391 IPR032675 -
Gma04g00788 1011 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Gma04g00788 1011 SUPERFAMILY L domain-like 41 384 - -
Gma04g00788 1011 CDD STKc_IRAK 707 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00788 Gma-Chr4 7501433 7504554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00788 23 1000 Receptor kinase-like Gene Family AT5G25930 53.049 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma04g00788 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00788 - K00924 gmx:100782076 1966.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00788 04 7501433 7504554 Gma04g00788 04 7501433 7504554 ECH
Gma04g00788 04 7501433 7504554 Gma06g00784 06 7107498 7110649 GST