Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00687 ATGGATGAATATTCTGCTAAAAGAGCCACTGATGGGGTGGTAGTCCCTAGAAAGGGGATACGCCATGCATTTAGAGATACTGCTAACGCCAGAGATCAAAATGGTCAGGTGTGCAGCCGCATTACTTGTAGTAGCAGAGTCAATACTCCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCAGCTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACATTTTTCAAGACTAATAGCCCAGGAAAACCGCTTATAAAGCCACGGAAATCACCATCATCTCAGTTAGAGACAGATTCATCTGAAATTAGTAGTGTACAGGATGATTCAGAAGTTTCAAAACTCGCCCCTCCCCCTGAAAAAAGTCAGACAAATGTTCAAGCTGAATTGGAAAATACAGTGTCTGGTAATGCCATGATGGAAGTAGGAAGCTCTAGTGTAGTATCCAATACAAGATCTCGGAGGAATTTTCATCCAAAGCCTGGATTAAGGGGCCAAGAAATTAAAAGCACTGGTCCAGTGACACGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAAATGCAACACTATTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAAGAAGGATGTCATAAAAAAGAGAAATTGTGAAGGGGAAGGTAGTTCCACTGGTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGCACGAAATTCTGGCTCCAGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGGAATACTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATTGATTAGTGGTCGTACCAGGGGAAGGCTTTCTAGCCAAGGAAATGCCAATCCCATGCCACCTAATGAGTCCCTTGTCAAGATACCTGATTTGCCCCGTTCTGGTGGTCTTAATATTCCTGGTGTATCACGTCATACTTCTGTAGATAGTCCCTTAAGTTGTCCTAGCTCTCATAGTAGACCAGTTACTGGCAGTGAGGAGTTATATGGTGTTATGCCTGTATCTCCTTCAGAGTATGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATGGATAGTATTGCAGAGgtattggtggcacttgataggattgaacaagatgttgagctaacacatgagcaaattcgtttactggaatccaacttgttcctaactggactaaacttctacgatccacatagagacatgcgattggacattgataacatgtcgtatgagcaactgctggctttggaagagaggatgggtactgtgagcacagctctaacagaggaAACACTATCAGAATGCCTAAAGAAAAGTTTCTACCAGTCCCCACCCTCTGAAAATGCAGCTGAGAGTTGCAATGAACATAAGGATGATACCAAATGCAGCATTTGCCAGGAGGAATATGTGGCTGCAGATGAAGTGGGGAGTCTGCAATGCGAGCATGCGTATCATGTGGCTTGCATACAGCAGTGGCTACAGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACCGTCAAATTCATCACCATCCCAATGA 1629 0.3812 MDEYSAKRATDGVVVPRKGIRHAFRDTANARDQNGQVCSRITCSSRVNTPKGAQIGSSEKGKSLKPSIQSSSAGKEAIGSSSRTFFKTNSPGKPLIKPRKSPSSQLETDSSEISSVQDDSEVSKLAPPPEKSQTNVQAELENTVSGNAMMEVGSSSVVSNTRSRRNFHPKPGLRGQEIKSTGPVTRAGTSRYGLRNLKCNTISDVIPAGCSPSDSTLNRKKDVIKKRNCEGEGSSTGRGKKMSGSSLEARNSGSRNGISISDSRISRNTPHRDRSDSNMAPVRTRKLISGRTRGRLSSQGNANPMPPNESLVKIPDLPRSGGLNIPGVSRHTSVDSPLSCPSSHSRPVTGSEELYGVMPVSPSEYGLTHSLMNLDSFRRRYNMDSIAEVLVALDRIEQDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGTVSTALTEETLSECLKKSFYQSPPSENAAESCNEHKDDTKCSICQEEYVAADEVGSLQCEHAYHVACIQQWLQLKNWCPICKASVAPSNSSPSQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00687 542 MobiDBLite consensus disorder prediction 156 189 - -
Gma04g00687 542 SUPERFAMILY RING/U-box 482 535 - -
Gma04g00687 542 MobiDBLite consensus disorder prediction 291 306 - -
Gma04g00687 542 Pfam Ring finger domain 488 530 IPR001841 -
Gma04g00687 542 MobiDBLite consensus disorder prediction 266 280 - -
Gma04g00687 542 MobiDBLite consensus disorder prediction 218 234 - -
Gma04g00687 542 SMART ring_2 489 529 IPR001841 -
Gma04g00687 542 MobiDBLite consensus disorder prediction 43 136 - -
Gma04g00687 542 MobiDBLite consensus disorder prediction 101 136 - -
Gma04g00687 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 534 - -
Gma04g00687 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 534 IPR045191 GO:0061630
Gma04g00687 542 Coils Coil 393 413 - -
Gma04g00687 542 MobiDBLite consensus disorder prediction 326 349 - -
Gma04g00687 542 MobiDBLite consensus disorder prediction 43 89 - -
Gma04g00687 542 MobiDBLite consensus disorder prediction 205 350 - -
Gma04g00687 542 ProSiteProfiles Zinc finger RING-type profile. 489 530 IPR001841 -
Gma04g00687 542 MobiDBLite consensus disorder prediction 238 265 - -
Gma04g00687 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 536 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00687 Gma-Chr4 6402920 6407349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00687 375 530 C3H Transcription Factor Family AT2G15530 41.667 2.79e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00687 - - gmx:100787213 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00687 04 6402920 6407349 Gma06g00681 06 6180927 6185382 GST
Gma17g01875 17 32508736 32511911 Gma04g00687 04 6402920 6407349 PCT
Gma14g01220 14 19795388 19798796 Gma04g00687 04 6402920 6407349 PCT
Gma04g00687 04 6402920 6407349 Gma17g01875 17 32508736 32511911 PCT
Gma04g00687 04 6402920 6407349 Gma14g01220 14 19795388 19798796 PCT