Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00684 ATGGGCGGTATCAGCCTTGAGGAAATCAAAAACGAAAACGTCGATCTGGAAAAAATTCCAGTAGAGGAAGTGTTCGAGTCGCTGAAATGTTCAACAGCAGGTCTAACATCAGACGAAGGAGCCAACAGGCTTCAAGTTTTTGGACCAAACAAATTGGAAGAGAAAAAGGAGAGCAAACTTTTGAAGTTTTTGGGTTTCATGTGGAACCCCTTATCATGGGTCATGGAAGCTGCTGCTATAATGGCCATTGCTTTGGCCAATGGTGGAGGAAGGCCTCCGGATTGGCAAGATTTTGTTGGTATCATTGCTCTCTTGTTCATTAACTCCACAATCAGTTTCATTGAAGAAAATAATGCTGGTAATGCTGCTGCTGCACTTATGGCTGGTTTAGCTCCCAAGACTAAGGTTCTTAGAGATGGGAGATGGACTGAACAAGATGCTGCAATTTTGGTCCCGGGAGACATAATCAGCATCAAACTGGGAGATATCATTCCTGCTGATGCACGTCTTCTGGAGGGTGATGCTTTGAGTGTTGATCAGTCTGCTTTGACTGGAGAGTCTCTTCCAGTAACAAAGAATCCCTCTGAGGAAGTGTTTTCTGGATCAACCGTTAAGAAGGGTGAGATAGAAGCAGTGGTGATTGCCACTGGAGTGCACACCTTTTTTGGCAAAGCTGCTCATCTGGTTGACAGCACAAACCAAGTTGGTCACTTCCAGAAAGTGCTTACAGCAATTGGTAACTTCTGCATTTGCTCCATCGCGGTGGGAATAATCATTGAGCTCATAGTCATGTACCCAATACAACACCGCAAGTACAGAGATGGGATTGACAATCTGTTGGTTCTTTTGATTGGAGGAATTCCAATTGCCATGCCAACTGTTCTGTCTGTCACTATGGCTATTGGTTCTCACAGGCTTTCGCAGCAAGGTGCCATTACAAAACGTATGACGGCTATCGAGGAAATGGCAGGAATGGATGTCCTCTGCAGTGACAAAACTGGAACTCTCACCTTAAATAAGCTCAGTGTTGACAAAAACCTGATTGAGGTTTTTGCCAAGGGTGTTGAGAAGGACTATGTTATCCTTCTTGCTGCAAGGGCTTCTAGGACTGAGAATCAGGATGCTATAGATGCTGCAATTGTTGGTATGCTTGCTGATCCAAAGGAGGCACGAGCTGGTATCAGGGAGGTCCACTTTCTTCCATTCAATCCTGTGGACAAGAGGACTGCTCTAACTTACATTGATTCTGATGGAAATTGGCATCGATCTAGCAAAGGTGCTCCTGAGCAGATATTGAACCTCTGCAACTGCAAAGAGGATGTAAGGAAAAGGGTTCATGGAACGATTGACAAGTTTGCTGAGCGTGGACTCCGTTCTTTAGGTGTTGCTAGACAGGAAGTACCTGAGAAAAACAAGGATAGTCCTGGTGCACCATGGCAATTTGTTGGTCTGCTACCACTTTTTGATCCTCCAAGGCATGACAGTGCGGAAACCATCACAAGAGCTCTGAACCTTGGTGTGAATGTTAAGATGATCACTGGTGATCAGCTTGCCATTGCCAAAGAAACTGGCCGAAGGCTTGGGATGGGAACAAACATGTACCCATCTTCTTCATTGCTTGGCCAAAGCAAGGATGCTGCTGTTTCAGCTGTTCCAGTTGATGAATTGATTGAGAAGGCTGATGGATTTGCTGGAGTATTCCCTGAACACAAATATGAAATCGTGAAGAGGCTGCAAGAGAGGAAGCATATTTGTGGAATGACAGGTGATGGTGTCAACGATGCTCCTGCATTAAAGAAAGCAGACATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCAAGAAGTGCTTCTGACATTGTCCTCACTGAACCTGGTCTGAGTGTCATTATTAGTGCAGTGCTAACCAGCAGGGCAATTTTCCAAAGGATGAAGAATTATACTATCTATGCAGTGTCAATCACCATTCGTATAGTATTTGGTTTCATGTTTATTGCATTGATTTGGAAATTTGATTTTGCACCCTTCATGGTGTTGATTATTGCCATACTAAACGATGGTACCATCATGACAATATCCAAGGATCGAGTGAAACCATCTCCAATGCCAGACAGCTGGAAGCTGAGGGAGATATTTGCCACTGGTATTGTGCTAGGAAGTTACATGGCACTAATGACAGTAGTATTTTTCTGGATCATGAAGGATACCGACTTCTTCTCGGACAAGTTCGGTGTGAGGTCTATAAGGAACAGCCCCGGAGAAATGATGGCAGCCCTGTACCTACAAGTCAGTATCATAAGTCAAGCACTAATTTTTGTCACAAGGTCCCGCAGCTGGTCCTATGTTGAAAGACCTGGTCTTCTTCTACTGAGTGCTTTTATGATTGCACAACTGGTGGCAACTTTTCTGGCAGTATATGCTAACTGGGGCTTCGCAAGAATTCAGGGAATGGGATGGGGTTGGGCTGGTGTAATCTGGCTCTACAGTTTAGTGACATATATCCCTCTTGATATACTCAAATTCGCAATCCGCTATGTTCTGAGTGGGAAGGCTTGGGATAATCTTTTGGAGAACAAGACTGCCTTCACTACAAAGAAAGACTATGGCAaagaagagagagaagcacagtgggcaactgcacagaggactcttcatggtcttcagccacctgaaacaaccaaccttttcaatgacaagaacagttacagggagctgtcagagattgctgagcaagctaagagacgtgccGAGGTTGCAAGGCTCAGGGAGCTTCATACTCTGAAAGGACATGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATTGATACAATCCAACAACATTATACAGTTTAA 2856 0.4219 MGGISLEEIKNENVDLEKIPVEEVFESLKCSTAGLTSDEGANRLQVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQDAAILVPGDIISIKLGDIIPADARLLEGDALSVDQSALTGESLPVTKNPSEEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGIIIELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRSSKGAPEQILNLCNCKEDVRKRVHGTIDKFAERGLRSLGVARQEVPEKNKDSPGAPWQFVGLLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDAAVSAVPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFATGIVLGSYMALMTVVFFWIMKDTDFFSDKFGVRSIRNSPGEMMAALYLQVSIISQALIFVTRSRSWSYVERPGLLLLSAFMIAQLVATFLAVYANWGFARIQGMGWGWAGVIWLYSLVTYIPLDILKFAIRYVLSGKAWDNLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQPPETTNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00684 951 Coils Coil 902 922 - -
Gma04g00684 951 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Gma04g00684 951 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Gma04g00684 951 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Gma04g00684 951 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Gma04g00684 951 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Gma04g00684 951 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Gma04g00684 951 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gma04g00684 951 SFLD C1.7: P-type atpase like 311 639 - -
Gma04g00684 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Gma04g00684 951 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gma04g00684 951 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Gma04g00684 951 Pfam E1-E2 ATPase 131 308 - -
Gma04g00684 951 Gene3D - 900 951 - -
Gma04g00684 951 Gene3D - 341 488 IPR023299 GO:0000166
Gma04g00684 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 847 IPR023298 -
Gma04g00684 951 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Gma04g00684 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 347 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma04g00684 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 678 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma04g00684 951 Gene3D - 94 815 - -
Gma04g00684 951 PANTHER CALCIUM-TRANSPORTING ATPASE 1 931 - -
Gma04g00684 951 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Gma04g00684 951 SUPERFAMILY HAD-like 325 635 IPR036412 -
Gma04g00684 951 PANTHER PLASMA MEMBRANE ATPASE 1 931 - -
Gma04g00684 951 SFLD p-type atpase 311 639 IPR044492 -
Gma04g00684 951 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Gma04g00684 951 Gene3D - 132 216 - -
Gma04g00684 951 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma04g00684 951 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma04g00684 951 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma04g00684 951 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma04g00684 951 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma04g00684 951 Gene3D - 326 625 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00684 Gma-Chr4 6375564 6382604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00684 4 951 Primary Pumps ATPases AT2G07560 83.544 0.0 1625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00684 K01535 - gmx:100785442 1818.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00684 04 6375564 6382604 Gma06g00677 06 6151979 6159625 GST
Gma17g01884 17 32672218 32680986 Gma04g00684 04 6375564 6382604 PCT
Gma14g01214 14 19625424 19635032 Gma04g00684 04 6375564 6382604 PCT
Gma04g00684 04 6375564 6382604 Gma17g01884 17 32672218 32680986 PCT
Gma04g00684 04 6375564 6382604 Gma14g01214 14 19625424 19635032 PCT