Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma04g00681 | ATGGGCTTCTCCATCCACATCCGCCACTACTTCGGCTCCCCCTCCGCCAGCATCCACAACCTCCCTGACACCTTTGGTAGGTCGCGACGCAGCTCACGCGAGTTTCGACCAGGCGGTGATCGACACGTTCCTGACGCTGGAGTACTCGATGGCGATGAATGTGAAAAGCTAGGAAAGGGGACGCTGGAGTGTGCGGTGTGCTTGAACGAGTTCGAGGACACCGAAACGCTGCGTTTAATCCCCAAGTGCGACCTCGTGTTCCACCCCGAGTGCATAGACGAGTGGCTACCTTCCCACACCACTTGCCCCGTGTGTCGCGCCAAACCCATCCTTGTTTTGGCCAACATCAATGGCGAAATGCCATGTTGA | 369 | 0.5745 | MGFSIHIRHYFGSPSASIHNLPDTFGRSRRSSREFRPGGDRHVPDAGVLDGDECEKLGKGTLECAVCLNEFEDTETLRLIPKCDLVFHPECIDEWLPSHTTCPVCRAKPILVLANINGEMPC | 122 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma04g00681 | 122 | PANTHER | RING FINGER DOMAIN-CONTAINING | 3 | 110 | - | - | |
| Gma04g00681 | 122 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 110 | IPR013083 | - | |
| Gma04g00681 | 122 | ProSiteProfiles | Zinc finger RING-type profile. | 64 | 106 | IPR001841 | - | |
| Gma04g00681 | 122 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 3 | 110 | - | - | |
| Gma04g00681 | 122 | Pfam | Ring finger domain | 63 | 106 | IPR001841 | - | |
| Gma04g00681 | 122 | SUPERFAMILY | RING/U-box | 63 | 111 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma04g00681 | Gma-Chr4 | 6331924 | 6332292 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma04g00681 | 3 | 108 | Rapid Response to Elicitors | AT3G05200 | 54.128 | 4.43e-29 | 106 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma04g00681 | K10664 | - | gsj:114408332 | 254.988 |