Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00653 ATGGCTGTGCTGCTGAGAATGGCTCAGCCTCACAATGGCAACACCAATAGCACTGCGAACCAGCAATTGGTCCTTCATGACTTTCTGGGTATGAAGCCCGCCGCCGATTCCCCCCAAACCGCCGATGTTAGGTTTCCGGAGCCGTCCGCCTCCGCCTCCTCCGCCGGAGGACGCGGCCCCTTCTCCGCCACCTCCGACATCGCTTCCGAGAAACAGATAGGAAATCATCTCGAGGGAGTTCCATTCTATGGCCCGAGGAGTGATTTTTCTGGCACTGAGATAAGCAACAGATTAGTGGGAAACAAGAGAAGTAATTCTGATTCCACTTTTATGGGTTCCTCCAGAGATGCCTTGCAAATGGTCCCTGATTCCTTTCAAAACTCACATTTGATGAAGGTTCTCCGCAGTGCGGCTGAAGGAGAAAGGTCACAAAGGCCCAATGACGATGAAGTGTTACTTGGTATGCAGTCAATGAAGCCATCCTCTTCTCAGATATTTCAGCCTCCCACCAGCACTAAGATTGATGCCAATAAATGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGCATCCACTGCGTGGGGCGCAATTGGCACCTTTTGTGCACCAAATGGCTTCAAGCAAGATTAGGGATTCCAACGCTGGCCCTTCATTCATCTCTCAGTCAGCTGCTGATGAAGGATCTAGAACGGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAACGCAGCTGCTACAGCCACTGAGAAAACTATTCCATCTGCTGTGATGCTTGGTGGCAGCAGGCCAAAGCCTGGAACTAATATAATAGAATCATCCACACCTCCAAGCAGTCAACATGGGTTAACTTCTGCCTGCCGCCAGATGACTATTTTTTATGGAGGCCAAGCTCATGTTTTTGATGATGTCCACCCTCATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGAGGATCTTGGTCCACTGCATTCTCTCCTAAATCTGTTGTAAAGATGGTTAGTGATGGTAACTTGCATGGTGGAGAAAATGAAACAGGTCTAGTTAGTAATGTGGCATTCCCACAGGAGCTTCATGGGAAATTGTCTATTACTGGCAGTTCTAGCCATGCCATCGGGCTTGGTGATCGAGTAACTACTCCAGCAGGGGCACACCAAGGAAGCGTTTTTGCAAAAGATACAAGAACTTTGGTCCAACCACCAGATCCCAGTTCTGAAGACAAAAGACCACAGTGA 1248 0.4848 MAVLLRMAQPHNGNTNSTANQQLVLHDFLGMKPAADSPQTADVRFPEPSASASSAGGRGPFSATSDIASEKQIGNHLEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSTFMGSSRDALQMVPDSFQNSHLMKVLRSAAEGERSQRPNDDEVLLGMQSMKPSSSQIFQPPTSTKIDANKWERSILMNVGPSMQHPLRGAQLAPFVHQMASSKIRDSNAGPSFISQSAADEGSRTGIKGPGILSSINAAATATEKTIPSAVMLGGSRPKPGTNIIESSTPPSSQHGLTSACRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSVVKMVSDGNLHGGENETGLVSNVAFPQELHGKLSITGSSSHAIGLGDRVTTPAGAHQGSVFAKDTRTLVQPPDPSSEDKRPQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00653 415 SMART tify_2 285 320 IPR010399 -
Gma04g00653 415 MobiDBLite consensus disorder prediction 35 64 - -
Gma04g00653 415 ProSiteProfiles Tify domain profile. 285 320 IPR010399 -
Gma04g00653 415 MobiDBLite consensus disorder prediction 379 415 - -
Gma04g00653 415 Pfam tify domain 290 319 IPR010399 -
Gma04g00653 415 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 52 413 IPR040390 -
Gma04g00653 415 PANTHER PROTEIN TIFY 8 52 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00653 Gma-Chr4 6030501 6037290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00653 18 318 Tify Gene Family AT4G32570 40.694 4.95e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gma04g00653 tify 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00653 - - gmx:100819293 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00653 04 6030501 6037290 Gma06g00646 06 5853031 5860028 GST
Gma17g01945 17 34532316 34537869 Gma04g00653 04 6030501 6037290 PCT
Gma04g00653 04 6030501 6037290 Gma17g01945 17 34532316 34537869 PCT