Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00647 ATGTCTCAGACCAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTTAAGAGGGACTTGAAGGCTTCTGCTCAGGCCTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACGAATGAGAAGCACTCAGAGGTTGCTGCTTCGTATATTGAGACACAATTAATAAAGGCAAGGGagcaacaacagcagcagaaccagcagcagccacaaccccagcagtcacagcatcaacaacagcagcagcaacaacacatgcagatgcaacagctcctgttgcagagagcacagcaacagcagcagcaacaacaacaacaacagcagcagcagcagcagcaacaacaacaacagcagcagcagcagcaacaacaacaacaacaacagccacaatcgcagcaacaacagtcacaaccgcaacaacagcaaAGTAGGGATAGGGCTCATCTTTTAAATGGTAGTGCAAATGGGTTAGTCGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAAATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACCCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAAAACATGGGCCAACTCTTGGACCCAAATCATGCATCGATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCACGTACTCAACAATTACCAGGGTCTACTCTGGATATTAAGGGTGAGATTAGTCCTGTTTTAAATCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTGAAAGGGTGGCCTCTCACAGGTTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAACCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTGGCGCAACAAAATCTGGCATCACCATCTGCCAGTGAAGAAAGTAGAAGATTGAGAATGCTATTGAATAATAGGAATATTGGTCTAAATAAGGACAGTCTTTCAAATCCTGTTGGTGACGTGGTATCAAATGTCGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAGCTGGCTCAGTTACAGCAACAGCAACAACAGTCAAGTACTAATGCACAGCAGCAGCAGCTTCAACAACATGTCCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCAGGTCCTGCCAATAGTTCAGGAACGGCAAATACAACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCGTCGACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCGCATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTAGCACAGATGGTACTGGAACCCTTACGTCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTCGAGTCTTTTTTGTCCCATGATGACACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGCAAAGTTGCCTGTTGCCATTTCTCATCTGATGGGAAGTTACTAGCAAGTGGTGGCCATGACAAAAGGGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAGGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGTACTTTCACGGGACATTCAACATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCTTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTGTCCAAGGGTGGCACCACACAGATGAGATTTCAGCCTCGTCTCGGGAGGTACCTTGCTGCAGCGGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGCGTGTCGATATTCACTAAAGGGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAATAAGTTTCATGCATCTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGGCAAGTCTGCATTCTTTTTTATTCAGTTTTTCATTTCTTTTCTCATTGGAGCTGTGGAATATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTCATTACTTCCTTGGCGGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTCCTCAAGCTCTGGAACTTCATGAATTTCCCACGCAGTTGGATTTTGcTGTCATTGCTTTTTTGA 2826 0.4062 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLLLQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPEGSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKLKLAQLQQQQQQSSTNAQQQQLQQHVLSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHASVFHPTYPSLLVIGCYQASLHSFLFSFSFLFSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLVASASHDKFLKLWNFMNFPRSWILLSLLF 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00647 941 MobiDBLite consensus disorder prediction 383 398 - -
Gma04g00647 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 705 IPR001680 GO:0005515
Gma04g00647 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 628 659 - -
Gma04g00647 941 SUPERFAMILY WD40 repeat-like 626 926 IPR036322 GO:0005515
Gma04g00647 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 894 926 IPR001680 GO:0005515
Gma04g00647 941 MobiDBLite consensus disorder prediction 423 463 - -
Gma04g00647 941 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 925 IPR044716 GO:0003714
Gma04g00647 941 Gene3D - 756 934 IPR015943 GO:0005515
Gma04g00647 941 Gene3D - 604 755 IPR015943 GO:0005515
Gma04g00647 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 628 669 IPR001680 GO:0005515
Gma04g00647 941 Pfam LisH 10 36 IPR006594 GO:0005515
Gma04g00647 941 MobiDBLite consensus disorder prediction 89 115 - -
Gma04g00647 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 670 705 - -
Gma04g00647 941 SMART WD40_4 832 872 IPR001680 GO:0005515
Gma04g00647 941 SMART WD40_4 887 926 IPR001680 GO:0005515
Gma04g00647 941 SMART WD40_4 706 746 IPR001680 GO:0005515
Gma04g00647 941 SMART WD40_4 749 785 IPR001680 GO:0005515
Gma04g00647 941 SMART WD40_4 788 826 IPR001680 GO:0005515
Gma04g00647 941 SMART WD40_4 663 702 IPR001680 GO:0005515
Gma04g00647 941 SMART WD40_4 621 660 IPR001680 GO:0005515
Gma04g00647 941 ProSitePatterns Trp-Asp (WD) repeats signature. 689 703 IPR019775 -
Gma04g00647 941 SMART Lish 8 40 IPR006594 GO:0005515
Gma04g00647 941 MobiDBLite consensus disorder prediction 474 534 - -
Gma04g00647 941 Coils Coil 114 156 - -
Gma04g00647 941 Pfam WD domain, G-beta repeat 889 926 IPR001680 GO:0005515
Gma04g00647 941 Pfam WD domain, G-beta repeat 709 746 IPR001680 GO:0005515
Gma04g00647 941 Pfam WD domain, G-beta repeat 791 825 IPR001680 GO:0005515
Gma04g00647 941 Pfam WD domain, G-beta repeat 630 659 IPR001680 GO:0005515
Gma04g00647 941 Pfam WD domain, G-beta repeat 667 702 IPR001680 GO:0005515
Gma04g00647 941 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gma04g00647 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 894 926 - -
Gma04g00647 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 713 755 IPR001680 GO:0005515
Gma04g00647 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 713 751 - -
Gma04g00647 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 795 835 IPR001680 GO:0005515
Gma04g00647 941 Coils Coil 424 444 - -
Gma04g00647 941 CDD WD40 628 926 - -
Gma04g00647 941 MobiDBLite consensus disorder prediction 383 554 - -
Gma04g00647 941 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00647 Gma-Chr4 5969900 5979801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00647 707 930 Miscellaneous Gene Families AT5G08390 22.271 1.52e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gma04g00647 WD40 0.0019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00647 - - gmx:100816263 1368.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00647 04 5969900 5979801 Gma06g00640 06 5793117 5806172 GST
Gma17g01949 17 34669150 34680301 Gma04g00647 04 5969900 5979801 PCT
Gma14g01138 14 17591451 17606957 Gma04g00647 04 5969900 5979801 PCT
Gma04g00647 04 5969900 5979801 Gma17g01949 17 34669150 34680301 PCT
Gma04g00647 04 5969900 5979801 Gma14g01138 14 17591451 17606957 PCT