Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00643 ATGGAAAGTGGTGAACTGAGAGTGGCAAGTGCACGCATAGGGAGCTCCAGCGTGTGGAGGAGCAGTGGTGGCGTTGATGTGTTTTCAGGGTCTTCAAGAAGGGATGATGATGAACAAGAGCTTAAATGGGCTGCAATTGAGAAACTCCCCACTTATCTACGTATGACTAGGGGCATTCTCACCGAGGCTGAAGGCCAACCTACAGAGATTGATATAAACAAACTCTGTCCACTTCAGAGGAAGAACTTGGTGGAGAGGCTCGTCAAGATTGCAGAACAAGACAATGAGAAGTTCTTGTTCAAGTTAAGGGATCGCATTGATAGTGTTGGACTTGAAATTCCGGCGATTGAAGTCCGTTTTGAGCACTTGAATGTTGAGGCAGAAGCTCATGTGGGAAGCAGGGCACTACCTACAATCTTTAACTTCTGCATTAATTTGTTGGAGGGGTTCCTCAATTCTCTTCACCTTATTCCAAGTCGAAAGAAGCCATTCACAGTTCTTGATGATGTCAGTGGAATCATCAAGCCTAAAAGAATGTCACTGCTTTTAGGCCCTCCAAGCTCTGGAAAGACCACATTGTTGTTGGCACTAGCTGGAAGACTTGGTAAAGATCTAAAATTTTCGGGGCGAGTTTCGTATAATGGTCATGGGATGGAGGAATTTGTACCTCAGAGAACATCAGCTTACATAAGTCAAACTGATCTACACATAGGAGAAATGACAGTAAGAGAAACATTGGCCTTCTCTGCAAGGTGTCAAGGGATTGGAACCCGTAATGAGATGCTGGCGGAATTGTCAAGAAGAGAGAAGGCTGCAAACATTAAGCCAGATCCTGATCTTGATATTTATATGAAGGCAGCAGCACTAGAAGGCCAAGAAACCAATGTTGTTACAGATTATATAATGAAGATTTTGGGACTAGAAATTTGTGCTGATACCATGGTAGGGGATGACATGATTCGAGGTATTTCTGGCGGACAAAAGAAGAGAGTCACAACTGGTGAGATGCTAGTTGGACCAGCAAGAGCACTTCTCATGGATGAAATATCAACTGGTTTAGACAGTTCTACCACATTCCAAATGGTTAATTCTTTAAGACAATCTATCCACATTCTGAATGGAACAGCTGTGATCTCTCTTCTCCAGCCAGCACCAGAAACTTACGAGTTATTTGATGATATAATTCTCCTCTCAGATGGGCAAATTGTGTATCAGGGTCCAAGGGAAAATGTTCTCGAGTTCTTTGAATACATGGGGTTCAAATGTCCAGAGAGGAAAGGAGTAGCAGATTTTTTACAAGAAGTAACATCAAGAAAAGACCAAGAACAGTATTGGGCAAATAAAGATGAGCCATACTCCTTCGTCACTGTTAAAGAGTTTGCTGAAGCATTTCAGTCGTTTCACGTTGGTCGAAAACTCGGTGATGAACTTGCCACTCCATTTGACATGTCCAAAGGCCACCCTGCTGTGTTGACAAAAAACAAGTATGGTGTTTGCAAGAAAGAACTTCTGAAAGCCTGTGTGTCCAGAGAATTCTTACTTATGAAAAGGAATTCGTTTGTCTATATTTTCAAGATGTGGCAACTGATTTTAACGGGGTTCATAACAATGACATTGTTCCTGAGAACTGAGATGCACCGGGATACAGAAACTGATGGTGGGATCTATATGGGAGCACTGTTCTTCGTACTAATTGTGATTATGTTTAATGGATACTCCGAATTATCCATGTCCATCATGAAACTCCCAGTTTTCTATAAGCAAAGGGACCTTCTCTTTTTTCCTTGTTGGGCATACTCTCTGCCTACATGGATCCTTAAGATTCCTATCACCTTAGTGGAAGTTGGTATTTGGGTTGTGATGACTTACTATGTTATAGGATTTGATCCTAGTATTGAGAGGTTCATCAAGCAATACTTTCTACTTGTTTGTATCAACCAAATGGCATCAGGACTTTTTCGATTTATGGGGGCAGTTGGGAGGAACATCATTGTTGCAAACACAGTTGGGTCATTTGCTTTACTTGCAGTTATGGTCATGGGTGGATTTATCCTATCTAGAGTTGATGTGAAGAAGTGGTGGTTGTGGGGTTACTGGTTCTCGCCCATGATGTATGGACAAAATGCTCTAGCTGTGAATGAGTTCCTTGGAAAGAGTTGGTCACATGTTCCACCTAATTCAACAGAACCATTAGGAGTAAAGGTCTTGAAGTCACGTGGGATCTTCCCTGAAGCATACTGGTATTGGATTGGAGTTGGAGCTTCCATTGGATACATGTTACTGTTCAACTTCCTTTTCCCCTTAGCTTTACATTATCTTGACCCATTTGGTAAACCCCAAGCTCTAATATCCGAAGAGGCCTTAGCTGAGAGAAATGCTGGCAGAAACGAACACATCATTGAATTATCATCTAGAATCAAAGGCTCTTCTGATAGAGGGAATGAAAGTCGTAGaaatatgtcctccagaacactgtcagcaagagtgggtagcattggtgcaagtgaacacaacaagaaacgagggatggttcttcctttcacacccctttccatcacttttgatgaaatcagatattcggtggagatgccacaggaaatgaagagccaaggcattcttgaagatcgacttgaactgttgaagggtgttaatggagtctttaggccaggagttcttacagctctaatgggtgtaagtggggctggtaaaacaactctaatggatgtGTTATCTGGAAGAAAAACAGCAGGTTATGTTCAAGGGCAAATCACTATATCTGGGTACCCTAAAAAGCAAGAAACGTTTGCGCGCATAGCAGGATACTGTGAGCAGACTGATATCCACTCTCCCCATGTTACAGTCTATGAGTCTTTGGTTTATTCTGCATGGCTTCGGTTACCCCCTGAGGTTGATTCTGTCACCAGACAGATGTTCATTGAGGAAGTTATGGAGCTGGTAGAGCTGACTTCATTAAGAGAAGCCTTGGTGGGATTGCCTGGAGTGAATGGCCTCTCCACGGAGCAGCGCAAGAGGTTAACAATTGCAGTTGAACTTGTTGCCAATCCATCTATTATATTCATGGATGAACCTACCTCTGGCCTTGATGCCAGAGCTGCTGCTATAGTAATGAGAACAGTGAGGAATACAGTTGATACCGGACGAACTGTGGTCTGCACAATCCACCAGCCTAGCATTGATATATTTGATGCTTTTGATGAGCTACTTTTGTTGAAGCGTGGAGGTGAGGAAATATATGTGGGACCTTTAGGCCAGTGTTGTTCTCAACTGATCAATTACTTTGAGggaattaatggggtgccaaaaattaaaaagggctataatcctgctacttggatgttggaggttacttcagaagcacaagaagcagctcttggacttaacttcgctgaaatatacaagaattctgacctatatagGAGAAACAAGGCCTTGATCAGGGAACTTAGCACACCTACAACAGGTTTCAAAGACTTGTACTTCCCCACAAAGTACTCACAGACTTTCATCACCCAATGCATGGCTTGCCTTTGGAAACAGCACCTATCATACTGGCGAAATCCCCCATATAGTGCAGTGAGACTTTTATTCACAACTATCATAGCCTTATTGTTTGGGACAATATTTTGGGATATTGGCTCCAAAAGGCAAAGAAAACAAGATCTATTTAATGCAATGGGATCCATGTATGCTGCAGTCCTCTTCATTGGGATACAAAATGCTACATCTGTGCAACCAGTTGTAGCCATTGAGAGAACAGTCTTCTATAGAGAAAGAGCTGCTGGAATGTACTCAGCTTTACCATATGCATTTGGACAGGTTGCTATTGAGATCCCATACATATTCATACAAACCCTCGTGTATGGAGTCATAGTGTATGCTATGATTGGGTTTGATTGGACGTTCAGCAAGTTCTTTTGGTATCTCTTCTTCATGTTCTTTACCTTTTTATACTTCACGTTTTATGGCATGATGGCTGTGGGTCTTACCCCGGATCACAACGTAGCTACTATAGTTTCCTTTGGGTTCTACATGATATGGAACCTCTTCTCAGGATTCGTCATTCCACGAACCAGAATGCCAGTGTGGTGGAGATGGTACTTTTGGATTTGTCCTGTGTCTTGGACCTTATATGGATTGGTTACTTCACAATTTGGTGACATAAAGGAACGTATAGATACTGGAGAGACTGTGGAAGAGTTTGTTAGGAGTTATTTTGGGTATAGAGATGACTTTGTAGGAGTAGCTGCAGCTGTGCTTGTTGGGTTTACACTGCTTTTTGGATTTACCTTTGCCTTCTCAATCAAGGCATTCAATTTCCAAAAGAGATGA 4350 0.3828 MESGELRVASARIGSSSVWRSSGGVDVFSGSSRRDDDEQELKWAAIEKLPTYLRMTRGILTEAEGQPTEIDINKLCPLQRKNLVERLVKIAEQDNEKFLFKLRDRIDSVGLEIPAIEVRFEHLNVEAEAHVGSRALPTIFNFCINLLEGFLNSLHLIPSRKKPFTVLDDVSGIIKPKRMSLLLGPPSSGKTTLLLALAGRLGKDLKFSGRVSYNGHGMEEFVPQRTSAYISQTDLHIGEMTVRETLAFSARCQGIGTRNEMLAELSRREKAANIKPDPDLDIYMKAAALEGQETNVVTDYIMKILGLEICADTMVGDDMIRGISGGQKKRVTTGEMLVGPARALLMDEISTGLDSSTTFQMVNSLRQSIHILNGTAVISLLQPAPETYELFDDIILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTVKEFAEAFQSFHVGRKLGDELATPFDMSKGHPAVLTKNKYGVCKKELLKACVSREFLLMKRNSFVYIFKMWQLILTGFITMTLFLRTEMHRDTETDGGIYMGALFFVLIVIMFNGYSELSMSIMKLPVFYKQRDLLFFPCWAYSLPTWILKIPITLVEVGIWVVMTYYVIGFDPSIERFIKQYFLLVCINQMASGLFRFMGAVGRNIIVANTVGSFALLAVMVMGGFILSRVDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWSHVPPNSTEPLGVKVLKSRGIFPEAYWYWIGVGASIGYMLLFNFLFPLALHYLDPFGKPQALISEEALAERNAGRNEHIIELSSRIKGSSDRGNESRRNMSSRTLSARVGSIGASEHNKKRGMVLPFTPLSITFDEIRYSVEMPQEMKSQGILEDRLELLKGVNGVFRPGVLTALMGVSGAGKTTLMDVLSGRKTAGYVQGQITISGYPKKQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSVTRQMFIEEVMELVELTSLREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGQCCSQLINYFEGINGVPKIKKGYNPATWMLEVTSEAQEAALGLNFAEIYKNSDLYRRNKALIRELSTPTTGFKDLYFPTKYSQTFITQCMACLWKQHLSYWRNPPYSAVRLLFTTIIALLFGTIFWDIGSKRQRKQDLFNAMGSMYAAVLFIGIQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVAIEIPYIFIQTLVYGVIVYAMIGFDWTFSKFFWYLFFMFFTFLYFTFYGMMAVGLTPDHNVATIVSFGFYMIWNLFSGFVIPRTRMPVWWRWYFWICPVSWTLYGLVTSQFGDIKERIDTGETVEEFVRSYFGYRDDFVGVAAAVLVGFTLLFGFTFAFSIKAFNFQKR 1449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00643 1449 SMART AAA_5 889 1081 IPR003593 -
Gma04g00643 1449 SMART AAA_5 176 408 IPR003593 -
Gma04g00643 1449 Pfam Plant PDR ABC transporter associated 720 783 IPR013581 -
Gma04g00643 1449 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 10 1449 - -
Gma04g00643 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Gma04g00643 1449 CDD ABCG_PDR_domain2 849 1087 IPR034003 -
Gma04g00643 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 876 1092 IPR027417 -
Gma04g00643 1449 Gene3D - 153 463 IPR027417 -
Gma04g00643 1449 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1449 - -
Gma04g00643 1449 Pfam ABC-2 type transporter 1177 1391 IPR013525 GO:0016020|GO:0140359
Gma04g00643 1449 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Gma04g00643 1449 Gene3D - 868 1100 IPR027417 -
Gma04g00643 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 852 1105 IPR003439 GO:0005524
Gma04g00643 1449 Pfam ABC-transporter N-terminal 91 142 IPR029481 -
Gma04g00643 1449 Pfam ABC transporter 880 1032 IPR003439 GO:0005524
Gma04g00643 1449 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Gma04g00643 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 424 IPR027417 -
Gma04g00643 1449 Pfam ABC-2 type transporter 382 434 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00643 Gma-Chr4 5915348 5922812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00643 890 1064 Calmodulin-binding Proteins AT2G36910 25.000 6.33e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00643 04 5915348 5922812 Gma04g00643 04 5915348 5922812 ECH
Gma04g00643 04 5915348 5922812 Gma06g00636 06 5739270 5746855 GST
Gma04g00643 04 5915348 5922812 Gma17g01956 17 34918304 34926620 PCT
Gma04g00643 04 5915348 5922812 Gma14g01132 14 16765843 16774603 PCT