Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00641 ATGGCTGCTACTGCTCCTTCATCTGCATACCCTTTTGGAATCCCTTTCCACTCCCACTCTCGAAGAGTGGATTGCTCAACCTCAACCTCCATGTTCCCCATTCACGCAGACCTCTCAACAATTTCTATGTGCCCACGTTCTGCTTCAAAGGGATTAGTTGATCAAGTATATGCACAGCTTGATAATGATGATTACTACAGGGAGAAAGTTCCAACACCCATTCTTGACATGGTTGAAAACCCTCTTTGCTTGAAGAACTTATCTCTTCAGGAACTGAAACAACTAGCAGTTGAAATCCGTTCAGATTTGTCTTCTATTATGTCAGGTACACAAATATCACCGAAAGCAAGTATGGCAGTGGTTGAGCTGACAGTTGCAATACATCATGTTTTCAATGCTCCAGTAGACAAAATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGGAAGGCGATCACTCATGACGACAATGAGAAGAAAGAATGGTCTTTCTGGTGTTACTTCCCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAGCAGTATTTCTGCTGGACTTGGTAGCATGGCAGTTGCGCGGGATATTAAGGGGAGGCGAGAACGCGTAATTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGCGTATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTTGTGATTTTGAATGATAGCCGTCACTCTTTACTTCCAAAAATTGAGGAGGGCCCAAAGACATTTGTCAATGCCCTATCTAGTACCCTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGGAGATTTAGAGAAGCTGCTAAGGGTGTTACGAAACGAATTGGTAGAGGTATGCATGAATTGgcagctaaagtggatgaatatgctcgtggtatgatgggtcctctaggttctactctttttgaagagcttgggttgtactacataggcccagtggatggacacaatattgaagatctcatatgtgttctgcaagaagtagcttccctggattcaatgggacctgtcttggtacatgtgataactgacgaaaatcagggaGATGAAAACAGTCAGAAAAGTGATATATCAGATGGGCAGCAGGATGAAGGTTCTGTTAAATCTGATTCGTTAGATAATCCTGTTCGGCCTCAAACATATGGCAATTGCTTTGTGGAGACTTTGGTTGTAGAAGCAGAGAAAGACAAAGATATTGTTGTTGTTCATGCTGGATTAACGATGGAGCCATCACTTGAACTGTTTCAGGAAAAATTTCCAGATAGGTTTTTTGATGTGGGAATGGCTGAACAACATGCAGTCACATTTGCTTCTGGTTTGGCATGTGGTGGATTGAAGCCATTTTGTGTCATAGCTTCCTCCTTTCTACAAAGAGCCTATGACCAGGTGGTGCATGATGTTGATCAACAGAGAATTCCAGTGCGTTTTGTTATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTTCAATGTGGAGCATTTGATATAAACTTTATGTCATGCTTACCAAACATGATTGTCATGGCCCCATCTGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTACTCGCATCAATAGTCAGCCTATCTGCTTTCGGTATCCAAGGGGTGCCCTGGTTGGGAGAGGGTACACTATAAGCGATGGAATCCCCATCAAGATAGGAAGAGGAAGAGTTCTTGTTGAAGGCAAAGATGTTGCTTTCCTAGGATATGGATCGATGGTTCAGAACTGCCTAAAGGCTCATTCACTCCTCGCCAAGCTTGGCATTGAGGTAACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCAGCTTTGTAAACACCACTCTTTTCTAGTTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCAGGTTGCTCAGTTTATTGCGGTTAATGGACTACTCGATGGAAGAATTCAGTGGCGACCAATTGTTTTACCAGACAGATATATTGAGCATGCATCACCAAATGAACAGCTTGATCAAGCAGGGTTGAGTGGACATCACATTGCTGCCACGGCATTGAGTTTACTAGGCCGTACCCGTGAAGCTCTCCTATTTATTCATGGTTTGGTTGTGGCCTTCTCAAACGCCTTATATACTTGCCATTCCCTGATCCTTCCTTCTACATTGGTGCATTTCTGTGTCTTCCGAACAACTGTGGGAAACATGGGAGCACCATTTAAGGGAATAATTCAAGATTTCAAGGGAAGAGCTCAATGCTATAAACAAGATTGGATTTGTGCACTCTGTTCTGGCGTTAGCATATTGGCTCCAACTTTCTACATATTCTTTGCTTCTGCTCTTCCTGTCATTGCTTTTGGAGAACAGCTTAATAGGGATACAGATGGAACCTTGAGCACAGTGGAAACATTGGCATCTACTGCTATTTGTGGAGTTATTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGCTGAACCAACTGTCATAATGTACACTTACCTCTACAGTTTTTGCCAAAAAACACCTGAACTGGGTGGCAAGCTCTTTCTGCCTTGGGCTGGTTGGGTTTGTGTTTGGACGGGAGTCTTTTTGATTCTGCTTGCAATTTTCAATGCTTGCACAATTATCACAAGGTTTACAAGAATTGCAGGGGAGTTGTTTGGCATGCTCATAACTGTTCTTTTCTTTCAAGAGGCTATAAAGGGATTGATAGGCGAGTTCAACATGCCAAAGAATGAAAATCCTTCCTCAGTGGAATTTCAATTCCAGTGGCTGTATACAAATGGATTACTCGCAATCATTTTCTGTTTTGGACTACTCGTCACTGCCCTTAAAAGCAGAAGAGCTAGAACGTGGCGATATGGAACAGGGTGGCTACGAGGATTTATAGCAGATTATGGGGTTCCAATGATGGTAGTGTTATGGACTGCACTGTCTTATACTGTACCAGGCAAAGTTCCAGATGGTGTTCCTAGAAGGCTCATTTCTCCCCTTCCCTGGGATGCTGCATCTCTCTATCACTGGACAGTAGTGAAGGACATGGGGAAGGTACCAGTGGTTTATATATTTGGGGCAATTATTCCAGCTCTGATGATAGCAGGCTTATACTTTTTCGATCACAGCGTAGCTTCGCAGATGGCGCAACAGAAAGAATTTAACCTTCAAAAGCCATCTGCCTACCACTATGATGTTTTGCTGCTTGGAATAATGACTTTGATTTGCGGGATCCTTGGCCTTCCTCCTTCAAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTTCTTAGGAGGCGGATGATCCGAAAGAAGGTGGTGAAGAGCGCCAAGGAATGTATTAAGCAACGAAGGACCAACTCTGAATTATATGGAAAGATGCAAGAGGTGATTGTAGAAATGGATACAGACCCTACGGTTAAAGAATTGGAGAATTTGAAGGAGGCTGTAATGCAATCTGATAGCAAGGATGGAGCAAAGGAAAAATTTGATCCTGAGAAACACATAGATGAATATCTACCAGTGCGGGTTAATGAGCAAAGAATGACCAACTTATTGCAGTCTCTCCTGGTTGCTGTATCAATCTTAGCCATGTCAGTTATCAAAAGGATACCAACCTCAGTTCTATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAAAATTTTGGAAGGTTCTCATGCCTCTTTTGTGGAGACAGTACCATTCAAGACCATAGCTGCATTTACAGCCTTACAGTTAGTATATTTTGCGTTATGTTTCGGGGTGACTTGGATACCTATAGGTGGAATATTGTTCCCCGTACCATTCTTCCTTCTCATAATTATAAGAGAACACTTGCTTCCAAAGATGTTCAAGCCTAACCATCTTCAAGAACTAGATGCTTCTGGTTATGAGGAAATTATTGGTGCTCCACATGGTTCACTGAGGGATAAGGAGCCAGATACTGATACTGATGGAAGCTCGGAAGACTTTTACGATGCAGAGATATTGGATGAGATGACAACCAACAGGGGAGAGTTGAAACTTAGAACTGTAAGCAGCTTCAATGATAGAAACCACAGCTTCAGTGAAGACAGACACACTCAGGTTTATCCTGGAAATGCTGTCTGA 4239 0.4105 MAATAPSSAYPFGIPFHSHSRRVDCSTSTSMFPIHADLSTISMCPRSASKGLVDQVYAQLDNDDYYREKVPTPILDMVENPLCLKNLSLQELKQLAVEIRSDLSSIMSGTQISPKASMAVVELTVAIHHVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTMRRKNGLSGVTSRFESEYDAFGAGHGCSSISAGLGSMAVARDIKGRRERVIAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTFVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQGDENSQKSDISDGQQDEGSVKSDSLDNPVRPQTYGNCFVETLVVEAEKDKDIVVVHAGLTMEPSLELFQEKFPDRFFDVGMAEQHAVTFASGLACGGLKPFCVIASSFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDINFMSCLPNMIVMAPSDEVELMHMVATATRINSQPICFRYPRGALVGRGYTISDGIPIKIGRGRVLVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLVTVEEGSIGGFGSQVAQFIAVNGLLDGRIQWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALLFIHGLVVAFSNALYTCHSLILPSTLVHFCVFRTTVGNMGAPFKGIIQDFKGRAQCYKQDWICALCSGVSILAPTFYIFFASALPVIAFGEQLNRDTDGTLSTVETLASTAICGVIHSILGGQPLLILGVAEPTVIMYTYLYSFCQKTPELGGKLFLPWAGWVCVWTGVFLILLAIFNACTIITRFTRIAGELFGMLITVLFFQEAIKGLIGEFNMPKNENPSSVEFQFQWLYTNGLLAIIFCFGLLVTALKSRRARTWRYGTGWLRGFIADYGVPMMVVLWTALSYTVPGKVPDGVPRRLISPLPWDAASLYHWTVVKDMGKVPVVYIFGAIIPALMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDVLLLGIMTLICGILGLPPSNGVLPQSPMHTKSLAVLRRRMIRKKVVKSAKECIKQRRTNSELYGKMQEVIVEMDTDPTVKELENLKEAVMQSDSKDGAKEKFDPEKHIDEYLPVRVNEQRMTNLLQSLLVAVSILAMSVIKRIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTSSRRYKILEGSHASFVETVPFKTIAAFTALQLVYFALCFGVTWIPIGGILFPVPFFLLIIIREHLLPKMFKPNHLQELDASGYEEIIGAPHGSLRDKEPDTDTDGSSEDFYDAEILDEMTTNRGELKLRTVSSFNDRNHSFSEDRHTQVYPGNAV 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00641 1412 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 77 703 IPR005477 GO:0008661|GO:0016114
Gma04g00641 1412 PANTHER BORON TRANSPORTER-LIKE PROTEIN 751 1407 - -
Gma04g00641 1412 Pfam HCO3- transporter family 946 1124 IPR011531 GO:0006820|GO:0016021
Gma04g00641 1412 Pfam HCO3- transporter family 1196 1286 IPR011531 GO:0006820|GO:0016021
Gma04g00641 1412 Pfam HCO3- transporter family 754 928 IPR011531 GO:0006820|GO:0016021
Gma04g00641 1412 Gene3D Helical hairpin bin 765 807 - -
Gma04g00641 1412 Gene3D - 396 563 - -
Gma04g00641 1412 Pfam Transketolase, pyrimidine binding domain 397 558 IPR005475 -
Gma04g00641 1412 MobiDBLite consensus disorder prediction 361 392 - -
Gma04g00641 1412 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 74 706 IPR005477 GO:0008661|GO:0016114
Gma04g00641 1412 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 395 584 IPR029061 -
Gma04g00641 1412 SMART Transket_pyr_3 396 561 IPR005475 -
Gma04g00641 1412 Gene3D - 67 367 - -
Gma04g00641 1412 MobiDBLite consensus disorder prediction 370 392 - -
Gma04g00641 1412 PANTHER ANION EXCHANGE PROTEIN 751 1407 IPR003020 GO:0005452|GO:0006820|GO:0016020
Gma04g00641 1412 CDD TPP_PYR_DXS_TK_like 402 555 - -
Gma04g00641 1412 CDD TPP_DXS 116 365 IPR005477 GO:0008661|GO:0016114
Gma04g00641 1412 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 458 IPR029061 -
Gma04g00641 1412 SUPERFAMILY TK C-terminal domain-like 569 705 IPR009014 GO:0003824
Gma04g00641 1412 Pfam Transketolase, C-terminal domain 574 697 IPR033248 -
Gma04g00641 1412 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 75 360 IPR005477 GO:0008661|GO:0016114
Gma04g00641 1412 Gene3D - 574 705 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00641 Gma-Chr4 5880564 5894384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00641 754 1411 Antiporters AT4G32510 66.172 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00641 K01662 K24194 gmx:100787937 1407.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00641 04 5880564 5894384 Gma04g00641 04 5880564 5894384 ECH
Gma04g00641 04 5880564 5894384 Gma06g00632 06 5710317 5716373 GST