Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00640 ATGTCAACGACGCATGCGAAGAAGATGTTTGCAAGGTTTTGTTTCTGCCATGATGAGGCTGCGGATGATGAGAGACATAGAAACCACATAGAGTTTGATCAAATGACGAATGAAGGAAGCCAATACAGCCTCACCGGCATTCCGCTTCCGCCTCTCGGCGCCACTAGCGCTGGCCACTCCGGGAGACACAAGCTCCGGAGTTACATTGTCTCGCGGTACAACCCTCGTTACAGATTGTGGAACACGTTTCTGGTGTTGTTAGTTTTCTACACTGCATTTGTTTGCCCTTTTGAGTTTGGATTCCTTAGTGATCCATCGCTTCCTCTTTCCATTGTTGACAATGTGGTGAACGGTTTTTTTGCCATTGACATTGTTCTGACCTTCTTTGTTGCCTACCTCGACAAGACTACGTATCTGCTCGTGGATGAACCAAAGCTCATTGCCTCGAGATATCTTAAAACATGGTTTGCCTTTGATGTCATTGCCACCATCCCTGCTGAAATTGCCCGCGACTCGTTGCCCCCTGATTTAAAGTCATATGGCGTGTTCAACATGCTCCGACTTTGGCGTCTCCGTCGAGTTAGTGCCATGTTTGCAAGATTAGAAAAGGACAGAAATTATAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTATTTTCAATGCATTTTGCTGCCTGCATTTTCTATTTTCTTGCTTTAGATCGTGACCCAAGTTCAACATGGCTTAGCCTGGTTTCTGAAGACGCTCAAAGCAGTGTTTGGAAGCGCTACGTAACATCAATGTACTGGTCCATAGTGACTCTTGCAACAGTCGGTTATGGTGACTTGCATCCTGTAAGTACCAGGGAGATGGTGTTTGACATATTTTATATGCTCTTTAACCTCGGACTAACGGCATATCTCATCGGAAACATGACAAACTTGATTGTTCATGGAACAAGCAGAACTAGGAAATATAGAGACACGGTGCAAGCTGCCACAGGTTTCGCCCATCGGAATCAGTTACCTATCCGCTTGGAAGAACAGATGCTTGCTCATTTGTTTTTGAAGTACAGAACTGATTTAGAAGGATTGCAGCAACAAGAAATTATTGAATCCCTTCCAAAGGCTATTAGGTCTAGCATCTCACACTACCTATTCTATCCACTTGTGGACAAGGTGTACTTGTTTCATGGAGTGTCAAGTGACCTACTCTTTCAACTGGTCACGGAGATGAGGGCCGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCGCCAACAGACCTTTATATCGTTGTTACTGGTGCTGCAGAACTCATCATTAGAAAGAATGGAATGGAACAGGTCATTGGTGAGGTAGGATTTGGAGATATAGTTGGAGAAATTGGAGTTCTATGTTACAGGCCACAGACGTTTACAGTTCGAACCAAACGATTGAGCCAAATTCTGCGCTTGAACCGTACTACATTTCTAAATCTTGTTCATTCAAATATTGGAGATGGGACAATAGTCATGAACAATTTTCTCCAGCATTTGCAAGAATCAAGGTATCCAGGGATGGATGCAATTTTGGCAGAAACGGAGGCCATGCTTGCTCGGGGAAAAATGGACATGCCCATTACCACATGCTTTGCAGCAAGCAGAAATGATGATCTATTATTGCATCGTTTGCTTAAGAAGGGTTCAGATCCAAATGAATTAGATAAGAATGGAAAGACAACACTGCATATTGCAGCTTCCAAAGGCAATGAGCATTGTGTAAATTTGCTTCTAGAATATGGTGCAGACCCCAATAGCAAAGATATGGATGGAAGTGTCCCACTATGGGAAGCAATGAAGGGTAGGCATGAATCTGTGATGAAAATTCTCATAGACAATGGTGCAGACATATCTTTAGCCAATGCAGGCCATCTAGCATGCAGTGCTGTTGAGCAAAATAACATGGAATTGCTCAAGGAAATTATTCAATGTGGCGTGGATGTGACACAACCTAAAAAGAATGGAATCACTGCTCTTCATACTGCAATAGCTGAAGGAAACACTGAGATGATTAACTTCCTTGTAGACCAAGGAGCAGACATTGACATGCCAGATGCTAATGGGTGGACTCCTAGGGTTATGGCAGAACAACACGGACGCGAAGAAATTAGAAATATATTTGATAACATCAAAGAGAGCAGAAAACCAAGTGTTATTCCAATACCAAGGAATGACAACAGGAGTGGGAGGTTTCAAATTGATCCAAGCATGCCTGCCATAACCCAAGAAAGCATGTCACTGCTACCTTATCATGGGAGAAGGTCTTCCAGCTCTTTTGATAATTCCATTTTTGGAATGATCTCAATTGCCAATCGTGGTAAGGTATCTGAAGGCCGTAGCAGTAATAGAGGGAACGTGAATGGATTAACCAGAGTGACACTTAGTTGTCCTGAAAAGGGTGAACATGCTGGAAAACTTGTTTTGCTGCCCAAGACCCTTGAAGAGCTGCTAGATATTGGTGCCAGAAAGTTTGATATATCTGCCACCAAAATTTTGACCATAGATGGAGCTGAAGTGGACGATATAAATCTTTTAAGAGATGGTGATCATCTTATTATTGCCGGTACTTGTATTGAAGAGGAAAACAAGAATTGA 2637 0.4274 MSTTHAKKMFARFCFCHDEAADDERHRNHIEFDQMTNEGSQYSLTGIPLPPLGATSAGHSGRHKLRSYIVSRYNPRYRLWNTFLVLLVFYTAFVCPFEFGFLSDPSLPLSIVDNVVNGFFAIDIVLTFFVAYLDKTTYLLVDEPKLIASRYLKTWFAFDVIATIPAEIARDSLPPDLKSYGVFNMLRLWRLRRVSAMFARLEKDRNYNYFWVRCSKLICVTLFSMHFAACIFYFLALDRDPSSTWLSLVSEDAQSSVWKRYVTSMYWSIVTLATVGYGDLHPVSTREMVFDIFYMLFNLGLTAYLIGNMTNLIVHGTSRTRKYRDTVQAATGFAHRNQLPIRLEEQMLAHLFLKYRTDLEGLQQQEIIESLPKAIRSSISHYLFYPLVDKVYLFHGVSSDLLFQLVTEMRAEYFPPKEDVILQNEAPTDLYIVVTGAAELIIRKNGMEQVIGEVGFGDIVGEIGVLCYRPQTFTVRTKRLSQILRLNRTTFLNLVHSNIGDGTIVMNNFLQHLQESRYPGMDAILAETEAMLARGKMDMPITTCFAASRNDDLLLHRLLKKGSDPNELDKNGKTTLHIAASKGNEHCVNLLLEYGADPNSKDMDGSVPLWEAMKGRHESVMKILIDNGADISLANAGHLACSAVEQNNMELLKEIIQCGVDVTQPKKNGITALHTAIAEGNTEMINFLVDQGADIDMPDANGWTPRVMAEQHGREEIRNIFDNIKESRKPSVIPIPRNDNRSGRFQIDPSMPAITQESMSLLPYHGRRSSSSFDNSIFGMISIANRGKVSEGRSSNRGNVNGLTRVTLSCPEKGEHAGKLVLLPKTLEELLDIGARKFDISATKILTIDGAEVDDINLLRDGDHLIIAGTCIEEENKN 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00640 878 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Gma04g00640 878 Gene3D Jelly Rolls 359 518 IPR014710 -
Gma04g00640 878 Pfam KHA, dimerisation domain of potassium ion channel 805 867 IPR021789 -
Gma04g00640 878 ProSiteProfiles cAMP/cGMP binding motif profile. 393 512 IPR000595 -
Gma04g00640 878 ProSiteProfiles Ankyrin repeat region circular profile. 571 602 - -
Gma04g00640 878 CDD CAP_ED 393 498 IPR000595 -
Gma04g00640 878 SMART ANK_2a 635 664 IPR002110 GO:0005515
Gma04g00640 878 SMART ANK_2a 668 697 IPR002110 GO:0005515
Gma04g00640 878 SMART ANK_2a 604 633 IPR002110 GO:0005515
Gma04g00640 878 SMART ANK_2a 571 600 IPR002110 GO:0005515
Gma04g00640 878 SMART ANK_2a 538 567 IPR002110 GO:0005515
Gma04g00640 878 ProSiteProfiles Ankyrin repeat region circular profile. 604 635 - -
Gma04g00640 878 ProSiteProfiles KHA domain profile. 805 878 IPR021789 -
Gma04g00640 878 SUPERFAMILY Ankyrin repeat 544 721 IPR036770 -
Gma04g00640 878 SMART cnmp_10 393 510 IPR000595 -
Gma04g00640 878 Gene3D - 540 723 IPR036770 -
Gma04g00640 878 PRINTS Ankyrin repeat signature 572 587 IPR002110 GO:0005515
Gma04g00640 878 PRINTS Ankyrin repeat signature 620 634 IPR002110 GO:0005515
Gma04g00640 878 SUPERFAMILY cAMP-binding domain-like 318 513 IPR018490 -
Gma04g00640 878 Pfam Cyclic nucleotide-binding domain 413 498 IPR000595 -
Gma04g00640 878 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 878 - -
Gma04g00640 878 ProSiteProfiles Ankyrin repeat profile. 668 700 IPR002110 GO:0005515
Gma04g00640 878 Pfam Ion transport protein 78 320 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma04g00640 878 Pfam Ankyrin repeats (3 copies) 545 633 IPR002110 GO:0005515
Gma04g00640 878 Pfam Ankyrin repeats (3 copies) 639 720 IPR002110 GO:0005515
Gma04g00640 878 PANTHER POTASSIUM CHANNEL AKT1 1 878 IPR045319 GO:0005249|GO:0006813
Gma04g00640 878 ProSiteProfiles Ankyrin repeat profile. 571 603 IPR002110 GO:0005515
Gma04g00640 878 Gene3D - 78 314 - -
Gma04g00640 878 SUPERFAMILY Voltage-gated potassium channels 73 314 - -
Gma04g00640 878 PRINTS EAG/ELK/ERG potassium channel family signature 90 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma04g00640 878 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma04g00640 878 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma04g00640 878 PRINTS EAG/ELK/ERG potassium channel family signature 261 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma04g00640 878 PRINTS EAG/ELK/ERG potassium channel family signature 287 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma04g00640 878 PRINTS EAG/ELK/ERG potassium channel family signature 305 314 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma04g00640 878 ProSiteProfiles Ankyrin repeat region circular profile. 668 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00640 Gma-Chr4 5872125 5878577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00640 33 868 Ion Channels AT2G25600 58.734 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00640 K21867 - gmx:100786870 1758.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00640 04 5872125 5878577 Gma04g00640 04 5872125 5878577 ECH
Gma04g00640 04 5872125 5878577 Gma06g00630 06 5693687 5699308 GST
Gma17g01973 17 35236166 35243744 Gma04g00640 04 5872125 5878577 PCT
Gma14g01118 14 16470619 16482347 Gma04g00640 04 5872125 5878577 PCT
Gma04g00640 04 5872125 5878577 Gma17g01973 17 35236166 35243744 PCT
Gma04g00640 04 5872125 5878577 Gma14g01118 14 16470619 16482347 PCT