Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00623 ATGGTACAAGCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTACTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCTGAGGCAGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAATGGTCAGAATGCAAAGACCAATTTCCCCACCTCAAAGAACCAAGCTGAAGCTGATCATGACAACAACAACACTTTCTTATCTCCAAAAGCTCTTTCAGAACTACTCAGCACAAAGCTGAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGCCTGAGGCTAGATGCTGATAATTCCCACATTGGAGTGTGGCAAAAAGGGGCAGGACCACATTCTGGCTCCAACTGGGTCATGAGGGTAGAGCTTGGAAAGAAACAAATTATAACCGAGGGTGAGTCAACGGGGTCACCCCAAAGTACTAATATTGGTGCTGTTGAAAATAATgaagtagaagtagaagtagaagtagaagaagaagaagaagAGGATAGAGTGGCTTTGCAGATGATTGAAGAACTACTCAATTGGAACTAG 579 0.4352 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQAEADHDNNNTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKQIITEGESTGSPQSTNIGAVENNEVEVEVEVEEEEEEDRVALQMIEELLNWN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00623 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 192 - -
Gma04g00623 192 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gma04g00623 192 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Gma04g00623 192 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gma04g00623 192 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gma04g00623 192 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Gma04g00623 192 Coils Coil 157 177 - -
Gma04g00623 192 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Gma04g00623 192 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Gma04g00623 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Gma04g00623 192 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00623 Gma-Chr4 5704312 5705021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00623 1 191 AP2-EREBP Transcription Factor Family AT5G25390 62.304 5.36e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma04g00623 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00623 - - gmx:100806821 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00623 04 5704312 5705021 Gma04g00623 04 5704312 5705021 ECH
Gma04g00623 04 5704312 5705021 Gma06g00610 06 5527397 5528684 ECH
Gma17g01076 17 9245148 9246073 Gma04g00623 04 5704312 5705021 ECH
Gma13g01473 13 29454981 29455962 Gma04g00623 04 5704312 5705021 ECH
Gma04g00623 04 5704312 5705021 Gma06g00610 06 5527397 5528684 GST