Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00600 ATGGGGAAGCCCACGGGGAAGAAGAAGGGTACCGTTACTCCAGGCGCTGCAAATTCACACGCCAAGCACGGAAAATCTTCCAAAGCCTTCGATGAAGACACGGCGGTGTTCATCACCATGTCACAAGAGTTCAGGGAAGAAGGCAACAAGTTGTTTCAGAAGAAGGACCACGAAGGCGCCATGCTCAAGTATGAGAAGGCTCTGAAGCTTCTCCCGAACAACCACATCGATGTCGCGCACCTTCGCACCAACATGGCCACGTGTTACATGCAATTGGGTCTCGGGGAGTACCCTCGAGCAATTCACCAATGCAATTTGGCGCTGGAAGTGTCTCCGAGATACAGCAAAGCTCTATTGAAAAGAGCCACCTGCTATCGTGAGCTCAATCGCTTCGATTTGGCGCTCAGGGATGTTCAACTTGTTTTGGGCATGGAGCCTAATAACCTCACCGCGTTGGAGCTTCTCGAGAGTCTCGGAAAGTCAACGGAAGAAAAAGGGGtctctgttgatgataaaggagtggcttttgatgctactgttcatcactctccagctccttcttcgcaaaaactgaagaaaaagagaggtaaaaaaactgaggacaacaaggtggttgcggaggaaaaagggttgagtagtagtgttgaggacaaggtgagttgtgttggggacaaggtggttgttgtggaaaaagtgagtagtgttgaggataaacaagtggtttcgaaaacgattgagcaagggaaaagggtggtggaacctgtggaggaagaaaaaactgtcacaATCACTAGGAGTGTGAAGTTGGTGTTTGGTGAGGATATAAGGTGGGCAGAGTTACCCGTGAATTGTAGTGTGAAGCTGGTGAGGGATATAGCTAGGGATCGGTATCCAGGTTTGAAGGGTGCTCTTGTCAAGTATAAGGATAAAGAGGGTGATTTGGTTACAATCACTACTACTGATGAACTGCGGCTAGCTGAAAAATCTGCTCCTGAGAAGGCATCGTTTAGGCTTTATATTACCGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAAATGGAACAACCAATGGGGATGAAGTGCGAAGGGGCGATGGAAAACCGAGTGATGGTGCTGAGAATGGAGATATGGAAGAAGGAAAAGATAAAGATGTGGTGAAAAGGATGGTTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGATGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGATACTCATGAGTATGCAATGAAGCTGTATGAAGAAGCAATAGAGGATTCAGTGGCAAGCAATGATGCTCAAGAACTTTTTAGAATGGCTGCGGATAAATTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGTAGTGTTCAGATGTCCCTGGCAAGGAACCAAGGTTTCTTTTTGGAGGATGGGGCAAGAGAGTCTTCCTTGGAGCATATAAAAGCTGCATATGAATTGGCACAAAAGGAGTATGAGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTATGAAGGGTATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCAATGGCATGCAAGAAGGACTTAGAAGCTGGCTTTTCTGATGAGGTTCTTAAACTTTATAACAAGGCAGAGGACAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGATTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATAGTCTTCTCCAAGATATTTCTGATAATGAAGCTTCAAAGCAAGCTACAAAGATGAGGTCTCAGATACATCTTTTGTGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCAGTCGAAAAGTTTGAACTAGCTGGGACTTCTGCAACGGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGATTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCCCAAGGGTGGCAGTTTGGTGATCCATCATTCCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTACAACTTGGAGCAATTTTAA 2181 0.3902 MGKPTGKKKGTVTPGAANSHAKHGKSSKAFDEDTAVFITMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPNNHIDVAHLRTNMATCYMQLGLGEYPRAIHQCNLALEVSPRYSKALLKRATCYRELNRFDLALRDVQLVLGMEPNNLTALELLESLGKSTEEKGVSVDDKGVAFDATVHHSPAPSSQKLKKKRGKKTEDNKVVAEEKGLSSSVEDKVSCVGDKVVVVEKVSSVEDKQVVSKTIEQGKRVVEPVEEEKTVTITRSVKLVFGEDIRWAELPVNCSVKLVRDIARDRYPGLKGALVKYKDKEGDLVTITTTDELRLAEKSAPEKASFRLYITEVSPDQEPSYDGNGTTNGDEVRRGDGKPSDGAENGDMEEGKDKDVVKRMVTVEDWLLQFARMFKNHVGFESDSYLDTHEYAMKLYEEAIEDSVASNDAQELFRMAADKFQEMAALALFNWGSVQMSLARNQGFFLEDGARESSLEHIKAAYELAQKEYEKAEMRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYAMACKKDLEAGFSDEVLKLYNKAEDSMEKGILMWEEIEEQRLNGISKSDKYKEQLEKMGLDSLLQDISDNEASKQATKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSATDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHYNLEQF 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00600 726 MobiDBLite consensus disorder prediction 345 383 - -
Gma04g00600 726 SUPERFAMILY TPR-like 42 531 IPR011990 GO:0005515
Gma04g00600 726 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Gma04g00600 726 SUPERFAMILY CAD & PB1 domains 263 351 - -
Gma04g00600 726 SUPERFAMILY TPR-like 420 619 IPR011990 GO:0005515
Gma04g00600 726 MobiDBLite consensus disorder prediction 359 383 - -
Gma04g00600 726 MobiDBLite consensus disorder prediction 1 28 - -
Gma04g00600 726 MobiDBLite consensus disorder prediction 179 205 - -
Gma04g00600 726 Coils Coil 485 512 - -
Gma04g00600 726 CDD PB1 267 340 - -
Gma04g00600 726 SMART tpr_5 41 74 IPR019734 GO:0005515
Gma04g00600 726 SMART tpr_5 483 516 IPR019734 GO:0005515
Gma04g00600 726 SMART tpr_5 79 114 IPR019734 GO:0005515
Gma04g00600 726 SMART tpr_5 115 148 IPR019734 GO:0005515
Gma04g00600 726 Gene3D Tetratricopeptide repeat domain 405 655 IPR011990 GO:0005515
Gma04g00600 726 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Gma04g00600 726 PANTHER PROTEIN PHOX4 1 725 - -
Gma04g00600 726 Gene3D Tetratricopeptide repeat domain 38 166 IPR011990 GO:0005515
Gma04g00600 726 Gene3D - 255 343 - -
Gma04g00600 726 PANTHER PROTEIN CLMP1 1 725 IPR044517 -
Gma04g00600 726 Pfam PB1 domain 264 341 IPR000270 GO:0005515
Gma04g00600 726 SMART PB1_new 264 343 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00600 Gma-Chr4 5470534 5474752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00600 25 148 Calmodulin-binding Proteins AT3G25230 30.075 7.12e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00600 - - gmx:100805760 1396.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00600 04 5470534 5474752 Gma06g00584 06 5283447 5283758 GST
Gma17g02040 17 36993421 36995774 Gma04g00600 04 5470534 5474752 PCT
Gma14g01065 14 13912964 13917151 Gma04g00600 04 5470534 5474752 PCT
Gma04g00600 04 5470534 5474752 Gma17g02040 17 36993421 36995774 PCT
Gma04g00600 04 5470534 5474752 Gma14g01065 14 13912964 13917151 PCT