Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00593 ATGGCGTACCACCATAACCCCCAAGAGCTTCCACTTCACCATTTCACTGACCAACAACAACACCATAACCAACCTCTCGTTGACAACTCCTTGCTCTCCGACCCTGCTTCCAAACCTGCCTCCGATCCTCATCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCACGCACTACACTGacaacaacaacaacaacaacaacaacGTTAACGCTGCTAACAACAACACCAACAACGGCACCAACTTCCTCAATCTTCACACTTCCACTTCCGACTCCGGCCAATGGCTTGCTCGCCCGATCCTCAACCGCAACCACAGCGAGGTCATCGACGACGTGACCGGCGCCGGCGACTCCAACATGGCGGCCGCCGAATCCGGCGATTTGAAGGGTGATGCGGCGGCGGTGGAGGGAGGAAGCGACGGGCTTATGAACTGGCAGAATGCGAGGCTGAAGGCGGAGATTCTAGCGCATCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTCGACCAGTTGCCAAGGATCGACGCTCAGCTCACACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTCGGACAAGCCATCGTTGGCGACGATAAAGAACTCGATCAGTTCTTGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCGACAATGTCTGATGAGGAAGATGAACAAGTAGATAGTGATGCCAATCTGTTTGATGGTGCTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCCACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGCTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAACCCCTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGTAATGCAGGTCATAGTGGTGCTGATCATCACATGTAA 1272 0.5039 MAYHHNPQELPLHHFTDQQQHHNQPLVDNSLLSDPASKPASDPHQPAPNWLNNALLRTHYTDNNNNNNNNVNAANNNTNNGTNFLNLHTSTSDSGQWLARPILNRNHSEVIDDVTGAGDSNMAAAESGDLKGDAAAVEGGSDGLMNWQNARLKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLTQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDEEDEQVDSDANLFDGALDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTALKSKRKSNAGHSGADHHM 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00593 423 Pfam KNOX1 domain 152 192 IPR005540 GO:0003677|GO:0005634
Gma04g00593 423 Gene3D - 336 397 - -
Gma04g00593 423 ProSiteProfiles ELK domain profile. 315 335 IPR005539 GO:0003677
Gma04g00593 423 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 412 - -
Gma04g00593 423 MobiDBLite consensus disorder prediction 18 50 - -
Gma04g00593 423 Pfam ELK domain 315 336 IPR005539 GO:0003677
Gma04g00593 423 SMART ELK_2 315 336 IPR005539 GO:0003677
Gma04g00593 423 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 36 412 - -
Gma04g00593 423 MobiDBLite consensus disorder prediction 18 36 - -
Gma04g00593 423 SMART KNOX1_2 150 194 IPR005540 GO:0003677|GO:0005634
Gma04g00593 423 CDD homeodomain 338 399 IPR001356 GO:0003677
Gma04g00593 423 ProSiteProfiles 'Homeobox' domain profile. 335 398 IPR001356 GO:0003677
Gma04g00593 423 SMART KNOX2_2 203 258 IPR005541 GO:0003677|GO:0005634
Gma04g00593 423 MobiDBLite consensus disorder prediction 392 423 - -
Gma04g00593 423 Pfam KNOX2 domain 207 257 IPR005541 GO:0003677|GO:0005634
Gma04g00593 423 SMART HOX_1 337 402 IPR001356 GO:0003677
Gma04g00593 423 Pfam Homeobox KN domain 355 394 IPR008422 GO:0003677|GO:0006355
Gma04g00593 423 MobiDBLite consensus disorder prediction 392 411 - -
Gma04g00593 423 SUPERFAMILY Homeodomain-like 337 401 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00593 Gma-Chr4 5421273 5425261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00593 1 411 Homeobox Transcription Factor Family AT5G25220 66.368 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma04g00593 KNOX2 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00593 - - gmx:100790048 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00593 04 5421273 5425261 Gma06g00577 06 5230489 5233902 GST