Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00581 ATGGAAACACTGAGCCACGAGCCTCTTCTCTATGATAACTCTGCTGGAGAGACTCCGCCAAGTCCAAGCACACCATTGCAGAATTCACGGGAGAAGAAACAACTATCTGTTAAGGAAGAAGAAGAGGAAGAAAAGGAGGCAAAAGCAGATACTTTATTGGATCTAAATGCCCCTGGTGGTGATTCTGCTATTGGGTGCAGTCCAGTGCTGAATCTGATCACGTGTTTGGACACAGATTTGTCAAGCACCACATCAGAAAACCAACATGGCTCAGAGCCACGAGTGTTCTCTTGCAACTATTGTCAGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAACGCCCACAAGAGAGAAAGGTCAATTGCAAAGAGAGGTCATCAAAGATCAGGATCACGTTTGATGGCCTCAGCTACAACAGCTTTGGGAATTCCCTTTCTCCATAATCACCTTCACCACCACTATGCCACTATGGCTTCTCTGCCTCTCCATGGTGCTTCTAGTAATAATAAACCACTTGGAATTCAGGCTCACTCCATTATTCACAAGCCTTCTTCTTCAAATTATTCTCATTTTTCATTCAATGGGTTTGGAACCACTTTTGGACATCGTGGTTGGTCTAGACCCCTTATTGATCAACAACCTGGAATAGGGAAGCTAACGATGGAAAGTTTTCATAAAACATCAAGAGGCAATGTTGGGAAATTCGATGTGGTGAAAACGACCAGGCTTAATTCAGCGACCAATGAAGAAATCAGTGGATATATGGTTAGTGGTATTAGTCTTTTGAAGACTAATCAAGAGGAAATGAAGCACCTTGACTTGTCCCTAAAGCTCTAA 846 0.4326 METLSHEPLLYDNSAGETPPSPSTPLQNSREKKQLSVKEEEEEEKEAKADTLLDLNAPGGDSAIGCSPVLNLITCLDTDLSSTTSENQHGSEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHQRSGSRLMASATTALGIPFLHNHLHHHYATMASLPLHGASSNNKPLGIQAHSIIHKPSSSNYSHFSFNGFGTTFGHRGWSRPLIDQQPGIGKLTMESFHKTSRGNVGKFDVVKTTRLNSATNEEISGYMVSGISLLKTNQEEMKHLDLSLKL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00581 281 MobiDBLite consensus disorder prediction 16 31 - -
Gma04g00581 281 MobiDBLite consensus disorder prediction 32 48 - -
Gma04g00581 281 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Gma04g00581 281 MobiDBLite consensus disorder prediction 111 135 - -
Gma04g00581 281 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 281 - -
Gma04g00581 281 MobiDBLite consensus disorder prediction 1 48 - -
Gma04g00581 281 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 281 IPR044246 GO:0009788
Gma04g00581 281 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Gma04g00581 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Gma04g00581 281 Gene3D Classic Zinc Finger 75 144 - -
Gma04g00581 281 Coils Coil 26 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00581 Gma-Chr4 5264815 5265942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00581 21 281 C2H2 Transcription Factor Family AT5G10970 40.000 8.88e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma04g00581 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00581 - - gmx:100819663 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00581 04 5264815 5265942 Gma06g00567 06 5071879 5073020 GST
Gma14g01043 14 13057323 13058903 Gma04g00581 04 5264815 5265942 PCT
Gma04g00581 04 5264815 5265942 Gma14g01043 14 13057323 13058903 PCT