Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00580 ATGACCGTAGAGAAGAAAAGGAATGATTCCGGCGACGAGTTCCCCGTCGGAATGCGTGTTCTTGCCGTCGATGATGACCCCACTTGCCTCTTGGTTCTGAAAACTCTCCTCCAAAGATGTCAATATCATGTAACCACGACTAATCAAGCAATAAAGGCGTTGGCTCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTACACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGATCTTCCTGTCATAATGTTATCTGCAAATGGTGATACGAAGATGGTGATGAAGGGGATTTCTCATGGGGCCTGTGATTATCTGCTGAAACCTGTGAGAATGGAGGAGCTCAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGACTCAAAGGAGAAGAACAAAACCAGCAACCTAGACAAACCTACTTCTAATAGTGGAAATGGACTAGGGTCATCAGGAACAGGAAATTCTGATCAAAATGAGAAGCTGACTAAGAAAAGGAAGGATCAAGATGAAGATGAAGATGAGGATCAGGAGAATGATCTTGACAATGAGGACCCATCAGCCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGACCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGCCATCTTCAGAAGTATAGGCTTTATCTGAAAAGAATTAGCTGTGTGGCTAACCAACAAGCCAATATGGTGGCGGCCTTAGGGGTTGCAGATCCATCCTATTTGAGAATGAGTTCGGTGAGCGGGGTTGGACATGTACAAACATTAAGTGGTTCCGGACAGCTTCATAACAATAATTTCAGATCCTTTCCACCTAGTGGGATAATTAATAGATTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCTTCTGGAGTACTTCAATTGAGTCAATCACAAAATTTAAACAATGCCAATGATCATCATAAATTCCAGTCAGTCATTGTTCCTGTTAATCAGAATGGTGTTCAGGGAATGACAGTGTCTGTAGGGCTTGATCAACTGCAAAACAATAAGGTTGTTATGTCTGTTCAGAACCTGACCACTGTTTTTGATGCCAAAACAACTTTTCCTATCCCAAATAAACTCCCAGATCCAAGACCAAAAATAACCAACTCTGTCTCTCATACTTCAGATGTGCATTTCTCAAACAATGCCTTGATGTTGGAACCACGCCCTCAAGGCTCACAAGGGAGTGTAAGAATTGGAACATTATCTTCTTCAGTAGCCTCTCAACATTCGGAATTTTCTTTGTCTTTGCTGGATCAAGGTAGATATAGTGATAATTGGACAAGTGCTGTGCAGCCATCTGTGATCCAGACAAACTTTTTCCCTCCAAGTGAATGTTTTAGACAGACTAATATACCTCCTGCAGATAACATGGCTTCTGTACCCTTGCAAGGTGGGAATCTAAGTGGTCCATCCATCACTTCATTGTCCAGGCAATCCCATGATTCAATGACAGAAATGCACTCTGAAGGAATGACTTTTACTAACAGACCTGGGCATACAAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCATAATCAGGATGCTACTCACCATTCAAATATTATGTCAATAAACTCACTGACTCCAGTCAATGGGGCTGCTGTTCAAGCTGGCCATGCAGCAACGAACTCGGTCTTACACAGAAACTTGGATTTTAATTATTGTGATCCCTTACAAATGAAGCATGAAGGGTTTGTGGAGTTAACTGATGAGACCTTATTGAAACAACATCAGGGGAATACCATGGACCAGCAAAAATCTCAAGAAAATCATTTCTCTAATAATCTTGGTTCACTGGAAGACTTGGTCAGTTCAATGATGAAATAG 1971 0.4206 MTVEKKRNDSGDEFPVGMRVLAVDDDPTCLLVLKTLLQRCQYHVTTTNQAIKALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKMVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSNSGNGLGSSGTGNSDQNEKLTKKRKDQDEDEDEDQENDLDNEDPSAQKKPRVVWSVDLHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGVADPSYLRMSSVSGVGHVQTLSGSGQLHNNNFRSFPPSGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNANDHHKFQSVIVPVNQNGVQGMTVSVGLDQLQNNKVVMSVQNLTTVFDAKTTFPIPNKLPDPRPKITNSVSHTSDVHFSNNALMLEPRPQGSQGSVRIGTLSSSVASQHSEFSLSLLDQGRYSDNWTSAVQPSVIQTNFFPPSECFRQTNIPPADNMASVPLQGGNLSGPSITSLSRQSHDSMTEMHSEGMTFTNRPGHTSSNVPFQGWDDHNQDATHHSNIMSINSLTPVNGAAVQAGHAATNSVLHRNLDFNYCDPLQMKHEGFVELTDETLLKQHQGNTMDQQKSQENHFSNNLGSLEDLVSSMMK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00580 656 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Gma04g00580 656 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Gma04g00580 656 Gene3D - 200 263 - -
Gma04g00580 656 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Gma04g00580 656 CDD REC_typeB_ARR-like 20 134 - -
Gma04g00580 656 SUPERFAMILY CheY-like 17 141 IPR011006 -
Gma04g00580 656 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 655 IPR045279 GO:0009736
Gma04g00580 656 MobiDBLite consensus disorder prediction 141 205 - -
Gma04g00580 656 Gene3D - 17 153 - -
Gma04g00580 656 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Gma04g00580 656 MobiDBLite consensus disorder prediction 150 171 - -
Gma04g00580 656 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Gma04g00580 656 Coils Coil 172 192 - -
Gma04g00580 656 MobiDBLite consensus disorder prediction 627 649 - -
Gma04g00580 656 PIRSF RR_ARR_type-B 1 656 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gma04g00580 656 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Gma04g00580 656 MobiDBLite consensus disorder prediction 627 656 - -
Gma04g00580 656 SMART REC_2 18 130 IPR001789 GO:0000160
Gma04g00580 656 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00580 Gma-Chr4 5247822 5252465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00580 1 381 Response Regulator Gene Family AT2G25180 59.184 3.53e-135 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma04g00580 Response_reg 6.2e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00580 - K14491 gmx:100793913 1288.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00580 04 5247822 5252465 Gma06g00565 06 5049396 5054378 GST
Gma17g02071 17 37755679 37761531 Gma04g00580 04 5247822 5252465 PCT
Gma14g01036 14 12912912 12918464 Gma04g00580 04 5247822 5252465 PCT
Gma04g00580 04 5247822 5252465 Gma17g02071 17 37755679 37761531 PCT
Gma04g00580 04 5247822 5252465 Gma14g01036 14 12912912 12918464 PCT