Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00579 ATGGCCTCTGTGCTTCTGTTGGTTTCACATTTTCCACTTATGAGAGGTTCGGTCCGGCTGTTAAATCTCGTCACTGTGCTGCTCTCAGGTTTCGGTTCCCGCGAATTTCCGAAACTCCCATTTTCCAGATCGCCGGAAAATCTCGCAATCTACGGATTTCTATCATTTTTAGCAGAATATGAAAAATCCGGGACAACTCAGGAAAAGATAGAGAGGATAGAGAGAAGTGATGCGAAAGAGAATTTATGTCAAGCCTGTGGTGAAAATGAAAATCTTGTGAGCTGTGGAACGTGCACATATGCTTACCATCCTAGGTGTTTACTTCCACCCCTTAAAGGTCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGATGCGGCCTACTACTGCTGCTGACAATGAAGCCACAAAATTAGGGTCAAAGCAAATTTTTGTCAAACAATACCTCGTTAAGTGGAAGGGCCTATCCTATTTGCATTGCACATGGGTGCCTGAGAAAGAGTTTCTGAAAGCATTTAAGACTCATCCTCGTCTAAAGACCAAGGTGAACAACTTCCATCAAAAAATGGCATCTGTCAATACTTCTGACGAAGACTTTGTTGCCATTCGACCCGAATGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGATGATGATGAGAGGGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATCGAAAGATTCAATAGATTGCGGTCTAGATCCAGCAAATTTTCTTCCAGTAAACAAAAAAACAGTGTTAAGGATGATGCTGAATTAAAGAAACAGCAGAAAGAATTTCAACATTATGAACAAAGTCCTGAGTTTCTTTCAGGTGGTACATTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTAAAGAGGGTGTCTCCCCACATCTGGTGGTTGCTCCACTTTCAACTTTGCGAAACTGGGAACGTGAATTCGCAACATGGGCACCTCAAATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAATGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAACTGAAGAAGATCAAGAAAAAGAAATCTGGTCATTTAATTAGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTTCTTTTGACATCATATGAAATGATCAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAAACATCGTGTTCTCTTGACAGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAAATTTCAAGGCTTCATAAAATGTTGGCCCCGCATCTCCTGAGAAGAGTGAAGAAAGATGTCATGAAGGAGCTACCTCCTAAAAAGGAACTTATTCTACGTATTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGCGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCTGATATTGATGATGCAAAAGAAGCATTCAAACAGCTGCTGGAATCATCGGGGAAGTTGCAATTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACGTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTCAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCAGGGGGCCTGGGGATAAACCTTGCAACCGCTGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGGGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTAGTTGTAGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGATATGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCAGGCAAATCCCGCCAAATTCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCTACTTTGGATGATGAAGATGAAGATGGATTTCTGAAGGCTTTTAAGGTTGCAAATTTTGAATATGTTGATGAGGCTGAGGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAGACACTTAACAGTTCAGAAAGGACACATTACTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCCTGGGCAAGGGGAAGCGAAACCGGAAGTTGATGGTTTCCGTGGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGAGCTTACTGATGGTGATTCAAATTCCACTGGAACTACAACTGCTAGAAGACCTTATAAAAAAAAAGCACGTACAGATAGCACAGAGCCACATCCTCTAATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTACGAAGAAATCAAAGACTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCGCCACATTCGCAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAGGTGAAGTATGCGTCACAACATCCTCAAACTCCATTGTTTTCAGATGACATATTATTACGCTATCCAGGATTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTTGGTTTTGCTACGTGCTGTTTTGAAACATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATATGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACACGTTAGTTCTCAGGCACAAAATGGTGCAAATTTGACAAATGCAGAAGTACCCAACAGTCAATCCAAGGAAAATGGTGGGAGTGATATAGCAACTGATGGTGCACAAGGTTCTGGTGATGCTAGGAACCAAGCACAGTTATATCAAGATTCGTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAATCAAATGAAGCAACAAATGAAGAACTTAAAAGTGAAACCAAGGCTACTAATTTCCCAAGTGATAAATTAGGGGACAGTGACACCAAAATGATTGATCAACTTCCGCAAGTAGAAACAATAGCTTCAGAAGAAATTGTGGCTGCATGTGATAGTGATCCCAATCAATTGGAGTTAGCTCGCCTTTACAATGAGATGTGCAAGGCAGTGGAGGAAGACCCCATGGATTTAGTTCAAAGTTCTTTGGCAAGAGAACCGGCAGAGCTCAATGTAGTGAAGAATTTCCCTCCACTAGAAACTATTTGCGAAGACATTAACAGAATCCTAACACCCACACAAGAACAACCTATTGCAGAAATGCCAATATCGAATTCAGATAAGCAATCAGAGGCTTTGTCACACGGTGAAAATTTGGCCTCCAAATCACCGCCAATTCCTCAAGATGCCTGCAAGCCTAAAGATTCAGCGGACAATGAGAGTAAAGATAAGAAAATAGAATCGGAATCTATAAAAGAAAGCTGTTCAAGCCTGGTAGAAGAGAAGAATGAAACACTAACTCTTCCGGATAAAGAGGATAGTAAAACAGAAATTGATGAAACTATGAATGATGCCGAGTTGAATGAAAACCCGGAGAAATCCGATGCTGTATTGGATGGTTAA 4413 0.404 MASVLLLVSHFPLMRGSVRLLNLVTVLLSGFGSREFPKLPFSRSPENLAIYGFLSFLAEYEKSGTTQEKIERIERSDAKENLCQACGENENLVSCGTCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNEATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDEDFVAIRPEWTTVDRILACRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRLRSRSSKFSSSKQKNSVKDDAELKKQQKEFQHYEQSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKEGVSPHLVVAPLSTLRNWEREFATWAPQMNVLMYVGSAQARNVIREYEFYFPKKLKKIKKKKSGHLISESKQDRIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETLNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTTTARRPYKKKARTDSTEPHPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSATFADGVPKEGLRIQDVLVRIAVLLLIRDKVKYASQHPQTPLFSDDILLRYPGLKGAKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGHVSSQAQNGANLTNAEVPNSQSKENGGSDIATDGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNEATNEELKSETKATNFPSDKLGDSDTKMIDQLPQVETIASEEIVAACDSDPNQLELARLYNEMCKAVEEDPMDLVQSSLAREPAELNVVKNFPPLETICEDINRILTPTQEQPIAEMPISNSDKQSEALSHGENLASKSPPIPQDACKPKDSADNESKDKKIESESIKESCSSLVEEKNETLTLPDKEDSKTEIDETMNDAELNENPEKSDAVLDG 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00579 1470 ProSitePatterns Zinc finger PHD-type signature. 83 124 IPR019786 -
Gma04g00579 1470 Pfam PHD-finger 83 125 IPR019787 -
Gma04g00579 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 806 IPR027417 -
Gma04g00579 1470 MobiDBLite consensus disorder prediction 1375 1470 - -
Gma04g00579 1470 CDD SF2_C_SNF 636 762 - -
Gma04g00579 1470 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 327 513 IPR014001 -
Gma04g00579 1470 SMART DUF1086_2 939 1098 IPR009462 GO:0003677|GO:0006338
Gma04g00579 1470 Pfam Helicase conserved C-terminal domain 638 751 IPR001650 -
Gma04g00579 1470 SMART ultradead3 311 524 IPR014001 -
Gma04g00579 1470 MobiDBLite consensus disorder prediction 1249 1277 - -
Gma04g00579 1470 MobiDBLite consensus disorder prediction 1403 1470 - -
Gma04g00579 1470 MobiDBLite consensus disorder prediction 933 983 - -
Gma04g00579 1470 MobiDBLite consensus disorder prediction 968 983 - -
Gma04g00579 1470 Gene3D - 127 218 - -
Gma04g00579 1470 SUPERFAMILY Chromo domain-like 95 206 IPR016197 -
Gma04g00579 1470 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 61 1084 - -
Gma04g00579 1470 CDD CD2_tandem 219 268 - -
Gma04g00579 1470 Coils Coil 867 887 - -
Gma04g00579 1470 Gene3D - 219 270 - -
Gma04g00579 1470 ProSiteProfiles Zinc finger PHD-type profile. 80 127 IPR019787 -
Gma04g00579 1470 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 61 1084 - -
Gma04g00579 1470 SMART chromo_7 219 273 IPR000953 -
Gma04g00579 1470 SMART chromo_7 128 191 IPR000953 -
Gma04g00579 1470 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 641 802 IPR001650 -
Gma04g00579 1470 Gene3D - 307 557 IPR038718 -
Gma04g00579 1470 Pfam CHD subfamily II, SANT-like domain 962 1095 IPR009462 GO:0003677|GO:0006338
Gma04g00579 1470 Pfam Chromo (CHRromatin Organisation MOdifier) domain 222 270 IPR023780 -
Gma04g00579 1470 Pfam Chromo (CHRromatin Organisation MOdifier) domain 131 186 IPR023780 -
Gma04g00579 1470 Pfam SNF2-related domain 335 615 IPR000330 GO:0005524|GO:0140658
Gma04g00579 1470 ProSiteProfiles Chromo and chromo shadow domain profile. 221 280 IPR000953 -
Gma04g00579 1470 SMART helicmild6 667 751 IPR001650 -
Gma04g00579 1470 MobiDBLite consensus disorder prediction 933 951 - -
Gma04g00579 1470 SUPERFAMILY Chromo domain-like 207 271 IPR016197 -
Gma04g00579 1470 ProSiteProfiles Rubredoxin-like domain profile. 90 134 IPR024934 GO:0005506
Gma04g00579 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 126 IPR013083 -
Gma04g00579 1470 Gene3D - 1065 1240 - -
Gma04g00579 1470 Pfam CHD subfamily II, DUF1087 873 931 IPR009463 -
Gma04g00579 1470 ProSiteProfiles Chromo and chromo shadow domain profile. 129 211 IPR000953 -
Gma04g00579 1470 SMART DUF1087_2 868 934 IPR009463 -
Gma04g00579 1470 MobiDBLite consensus disorder prediction 1175 1201 - -
Gma04g00579 1470 CDD CD1_tandem 127 200 - -
Gma04g00579 1470 Gene3D - 558 782 IPR027417 -
Gma04g00579 1470 SMART PHD_3 82 125 IPR001965 -
Gma04g00579 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 548 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00579 Gma-Chr4 5220989 5245476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00579 337 812 RAD5 or RAD16-like Gene Family AT1G02670 23.540 1.08e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma04g00579 SNF2_N 4.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00579 K11643 - gmx:100790230 2734.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00579 04 5220989 5245476 Gma06g00564 06 5029359 5047013 GST
Gma17g02073 17 37801436 37825267 Gma04g00579 04 5220989 5245476 PCT
Gma04g00579 04 5220989 5245476 Gma17g02073 17 37801436 37825267 PCT