Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00574 ATGGCAAAGTGTCATCAGAACAACGTCGGATCCATCGCTCTTGACCACCGCCACTCCGCCAAAAATGCCACCGCCGCCGGCCACTTCCGCGTGCTCCGCCGCTTGATCTTCGACGCCGTCAGCTGCGGCGGCACCTCTCGCTACCGGTATCGCCAGCGCGGTGGCGATGTCAGCGACGGCGGTGACTTCAGCTCAGCGGCGTGCCACACAGAGAAGGAGGAGAGGTCGGAGAAGCTATCGGATCTTCTGAACGCCGCGGAGAATAAAATGGCGGCGGCGGAGGAGGAGAAGAAGAAGGAAGAGGCACTGGCGGAACTGAAGCAAGTGGTGAAGGAGCTGCGCGAAGAAGACTTTAGGAAGCAGCGAATCGCCGCTGCGAGAGTGAGGTCACTAGCGAAGGAAGATTCGGAAGCGAGAGTGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGGATGCTCGATTCAGAAGACGCTCATTCTCAAATCGCATCGCTCTACGCATTGCTCAATCTCGGAATCGGCAACGATGCAAATAAAGCGGCTATAGTGAAAATTGGTGCGGTGCACAAGATGCTGAAGCTAATCGAATCGAGCGGTTTAGATTCGTCGGTGTCTGAAGCGATTGTTGCAAATTTCCTCGGATTAAGCGCTTTGGATTCGAACAAACCGATAATTGGATCCTCCGGTGCAATACCGTTCCTAGTTAGAACCCTAACGAATTTAAACGATAGTAAAAGCACGTCTCAATCCCAATCGCAAGTGAAGCAAGATGCTATGCGAGCTTTGTACAATCTCTCGATCTGTCAGAGCAACGTTTCAGTAGTTTTGGAAACAGATTTGGTTTGGTTTCTAGTGTCCACAATAGGAGACATGGAAGTGAGCGAGAGAAGTCTCGCGATTCTGAGCAATTTAGTGTCGACTCCGGAGGGTAGAAAAGCGATTAGCAGCGTTCGCGACGCGATTCCGATTCTTGTGGACGCGTTGAGTTGGACGGACTCGCCGGAGTGCCAAGAGAAGGCGTCGTACGTTTTGATGATAATGGCGCACAAAGCGTACGGTGACAGGCGGGTGATGATAGAGGCAGGGATAGTGTCGTCGCTGCTTGAGTTAACGCTGGTGGGAACCACGCTGGCTCAAAAGAGAGCCTCCAGAATATTGGAGTGTTTGAGGATAGACAAAGGGAAACAGGTTTCTGGAAGTTACGGTGGAAACTTTAACTTGGGTGTCTCTGCTCCTATTTGTGGATCTTCTTCTTCTTCGTCGAAAGGGTGCTTGGTGGAGGAAGATGGGATCATGAGTGAGGAAAAGAAAGCGGTGAAGCAGTTAGTGCAGCAGAGTTTGCAGAGCAATATGATCAAGATTGTCAAGAGGGCTAACTTGCGTCACGATTTTGTTACATCTACCCATTTTGCTTCACTCACTTCCAAGAGTCTCCCATTTTGA 1449 0.5114 MAKCHQNNVGSIALDHRHSAKNATAAGHFRVLRRLIFDAVSCGGTSRYRYRQRGGDVSDGGDFSSAACHTEKEERSEKLSDLLNAAENKMAAAEEEKKKEEALAELKQVVKELREEDFRKQRIAAARVRSLAKEDSEARVNLAMLGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKAAIVKIGAVHKMLKLIESSGLDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLTNLNDSKSTSQSQSQVKQDAMRALYNLSICQSNVSVVLETDLVWFLVSTIGDMEVSERSLAILSNLVSTPEGRKAISSVRDAIPILVDALSWTDSPECQEKASYVLMIMAHKAYGDRRVMIEAGIVSSLLELTLVGTTLAQKRASRILECLRIDKGKQVSGSYGGNFNLGVSAPICGSSSSSSKGCLVEEDGIMSEEKKAVKQLVQQSLQSNMIKIVKRANLRHDFVTSTHFASLTSKSLPF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00574 482 Coils Coil 69 116 - -
Gma04g00574 482 Gene3D - 84 247 IPR011989 -
Gma04g00574 482 Gene3D - 248 401 IPR011989 -
Gma04g00574 482 SUPERFAMILY ARM repeat 105 392 IPR016024 -
Gma04g00574 482 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 282 IPR000225 GO:0005515
Gma04g00574 482 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 482 - -
Gma04g00574 482 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 482 - -
Gma04g00574 482 SMART arm_5 220 269 IPR000225 GO:0005515
Gma04g00574 482 SMART arm_5 177 219 IPR000225 GO:0005515
Gma04g00574 482 SMART arm_5 270 308 IPR000225 GO:0005515
Gma04g00574 482 SMART arm_5 135 175 IPR000225 GO:0005515
Gma04g00574 482 SMART arm_5 309 351 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00574 Gma-Chr4 5187440 5189080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00574 121 389 U-box Gene Family AT3G46510 37.091 7.51e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00574 - - gmx:100818576 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00574 04 5187440 5189080 Gma06g00559 06 5007238 5008942 GST
Gma17g02078 17 37941037 37944181 Gma04g00574 04 5187440 5189080 PCT
Gma14g01027 14 12624050 12626531 Gma04g00574 04 5187440 5189080 PCT
Gma04g00574 04 5187440 5189080 Gma17g02078 17 37941037 37944181 PCT
Gma04g00574 04 5187440 5189080 Gma14g01027 14 12624050 12626531 PCT