Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00545 ATGGCTTCCAAGCTCTGCGACTCATGCAAATCCGCCACTGCTACCTTGTACTGCCGCCCTGACGCCGCGTTCCTCTGCGGCGCCTGCGATTCTAAGGTCCACGCCGCCAACAAGCTCGCGTCGCGCCACCCGCGCGTGGCGCTCTGCGAGGTGTGCGAGCAGGCCCCGGCGCACGTAACCTGCAAGGCTGATGCCGCCGCGCTCTGCCTTGCCTGCGACCGCGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGCATCCCCGTCTCACCGTTCTTCGAGTCCGTACACTCCGTCAAGGCCTCCTCGCCGATCAACTTCCTAGATGACCACCGCTTCTTCTCCGACGCCGATGCTGACGTCAGCACCGAGGAGGCCGAGGCCGCCTCCTGGCTGCTTCCTAATCCGAAGACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAAACCGAGCCGGTTCCTTACATAGATCTGGATTATGCTGCCGTGGATCCTAAGGCGGAGCAGAAAAGCTCCGCCACCGCCGACGGCGTCGTTCCCGTGCAGAGCAACTTCGAGCCATTCGCCTACGGTTACAAGTACAATACCACTCTCTCACAGTCTCAGATGAGCCAGAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTCGTGCCGGACGGGAACACAATGTCGGAGACATCGAACTGCAGCTACAGCAAGGTGCCTCCGGTGACGGTGACGGTGACGGCGCAGTTCTCGGCGGCGGATAGGGAGGCGAGAGTGTTGAGGTACAGGGAGAAGAGGAAGAACCGTAAGTTCGAGAAGACGATTCGTTACGCATCGAGAAAAGCATATGCGGAGGCGAGGCCAAGGATCAAAGGGAGGTTTGCGAAACGCACTGACCCGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCGTGTTGA 930 0.6054 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVALCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERIPVSPFFESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPNPKTDLNSSQYLFSETEPVPYIDLDYAAVDPKAEQKSSATADGVVPVQSNFEPFAYGYKYNTTLSQSQMSQSVSSSSMEVGVVPDGNTMSETSNCSYSKVPPVTVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAEARPRIKGRFAKRTDPDPLAGYGVVPSC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00545 309 Pfam CCT motif 252 294 IPR010402 GO:0005515
Gma04g00545 309 SMART bboxneu5 1 48 IPR000315 GO:0008270
Gma04g00545 309 SMART bboxneu5 49 91 IPR000315 GO:0008270
Gma04g00545 309 CDD Bbox1_BBX-like 5 48 - -
Gma04g00545 309 ProSiteProfiles CCT domain profile. 252 294 IPR010402 GO:0005515
Gma04g00545 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 308 - -
Gma04g00545 309 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Gma04g00545 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 308 IPR045281 GO:0009909
Gma04g00545 309 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Gma04g00545 309 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Gma04g00545 309 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00545 Gma-Chr4 4907149 4908187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00545 1 308 C2C2-CO-like Transcription Factor Family AT5G24930 53.476 5.12e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma04g00545 zf-B_box 4.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00545 - - gmx:100794431 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00545 04 4907149 4908187 Gma04g00545 04 4907149 4908187 ECH
Gma04g00545 04 4907149 4908187 Gma06g00536 06 4756484 4757998 GST