Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00543 ATGGAGAATGATTGTATAAAGGACATGGACATTGAGGTCGTTCCTTCAATGTGGCCTGAAGATATTGGAATGGAGGTTGGGAAGCAATTTAACATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGCCTCATGGAGCTTACAAATTTTACAGAAAAGGGCTCTTCTCAGTTGGCCTACCTAATGAAACAATGGGAGTACAAACAGGCCAATGTTGTGCGTCTCCTCAGGGAAGAACTTGACAATCTAAGCAAGCAAAGGCAGGATGTTGAGCTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTCGAGGAAGAACGACATGGGGCAGATAAACGTCCAGTTTCTATATTGGATGATGTTTATGATGGTATATGGCAAGACATACCTTGCAGGAGAAGTGATGTTGTGGTTGAAAACAAGAGGAGTGAGATTGATGCTGAGTATGACACTGTCATGTGCTGGAAACAGCGAGCGTTGCATTCAGAGAAGCAGCTGGAGGCAAGTATCCAAAGAGAACAGATACTCGAAGAAAAGTTGCAAGAAAGAATAGCAAACATTGAAAGGCAGTCCTCACCTGTGGAAGAACTCTCCCAGATACTGAAGAGGGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTATTGTTATTGGCCATCAGGACAAAGAATTGCGCTATTGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATCGGAAAAACCGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAAGCTCAAGAGTTTAAGAGAGAGGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAGCAGGGGAGACAATAGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAACACGAAACTCGATTGGGAGCAAAGACAACTCCTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTCGATCTTTCCAAGGTTGAGTCAGGAGTGATGAAATTGGAAGCTACAAAGTTCAGGCCAAGAGAGGTAGTCAGGCATGTACTCCAGATCGCTGCGGCCTCATTGCAAAAAATACTAACCTTAGAAGGACATGTAGCAGATGATGTGCCTATTGAGGTCATTGGTGATGTTTTAAGAATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCATCAAGTTCACCCATGAAGGCAAAGTTGGAATAAATCTTTATGTTGTGTCAGAGCCTACTTTTGCAAAAGCAGAATGCATCCAAAAGATGACTTCAAGCCATTCAACTATTTCAGTGAATGGTGTAAAGGAAGAGAAATATCTCTCAAAACCTCAAAGTGACAGTGATAGAAATCTTCTTGATGGTTGTCAAAAACATGATGACCATCCCAGCCAAAACCATGCATTCCATGAAGAATGTAGATCTCCTGTCAAAAGTGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTAATTCAGCTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCACACTCGAAAGTATGGTGGTACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCAACTAACAGTTTCTAGCAAAGAACACTATGGTTCTACTTTCACTTTCATACTTCCATACAAGGTTTCAATCGCTTGTGATCATTCTGATGATCTGGATGAGCTCTCTGACGTGGAGAATAATGATGCTGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTTTTCTCATCTAATGGATCTAGCAGGACACATAAGTTATTAACACACAAAATTGGCTACACCAGCTCACATAAGCTTGGTGGATTTTCTGAGAGTTTGTATTCATTCCCCTCCAATGATATCATGTCAAAAGGGACATGTTCAGCTGATGATGCATCTTCTGTGGTTGAGGTTCCAGAGATGTCTGAATCGGCTAGTTCATCTGGTCACAGCCAAAAAACTAAGTCAAATGGAGAAATGTCTGAAGCAAAGTCAAATGAACTACAACAAACAACATGTCAGGGTCATGGGAAGACAAACACAACTTTCCAATGCGTTACAAACAGCAGTGTATCTGAAGTAACCAAATCCACAATAATACCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAGTCCATGATGAAACAATTAGGCCATAGCATAGATGTTGTGAACAATGGAGTGGAAGCCGTACGTGCAGTTCAGCGTCACACTTATGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAGGCAACAAAACTGATTCGGACTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTGTACAAGATCCAGATTGTGAATGTTCTGTACCATCTACAAAGCGGATCCCCATTGTTGCGatgacagcaaatgctttgtcagagagtgctgaagagtgttttgcaaatgctagtgtataa 2889 0.4019 MENDCIKDMDIEVVPSMWPEDIGMEVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKQWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERHGADKRPVSILDDVYDGIWQDIPCRRSDVVVENKRSEIDAEYDTVMCWKQRALHSEKQLEASIQREQILEEKLQERIANIERQSSPVEELSQILKRADNFLHFILQNAPIVIGHQDKELRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKEAQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVRHVLQIAAASLQKILTLEGHVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGKVGINLYVVSEPTFAKAECIQKMTSSHSTISVNGVKEEKYLSKPQSDSDRNLLDGCQKHDDHPSQNHAFHEECRSPVKSECSMNGDTEEQPNSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHTRKYGGTGLGLAICKQLVELMGGQLTVSSKEHYGSTFTFILPYKVSIACDHSDDLDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGSSRTHKLLTHKIGYTSSHKLGGFSESLYSFPSNDIMSKGTCSADDASSVVEVPEMSESASSSGHSQKTKSNGEMSEAKSNELQQTTCQGHGKTNTTFQCVTNSSVSEVTKSTIIPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRHTYDLILMDVCMPVMNGLQATKLIRTFEETGNWDAARNAGIEQSVQDPDCECSVPSTKRIPIVAMTANALSESAEECFANASV 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00543 962 SMART REC_2 838 962 IPR001789 GO:0000160
Gma04g00543 962 Gene3D PAS domain 210 345 - -
Gma04g00543 962 ProSiteProfiles Histidine kinase domain profile. 375 677 IPR005467 -
Gma04g00543 962 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 675 IPR003594 -
Gma04g00543 962 MobiDBLite consensus disorder prediction 776 812 - -
Gma04g00543 962 CDD HATPase_EvgS-ArcB-TorS-like 484 674 - -
Gma04g00543 962 Pfam Response regulator receiver domain 840 908 IPR001789 GO:0000160
Gma04g00543 962 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 1 960 - -
Gma04g00543 962 SMART HKATPase_4 479 677 IPR003594 -
Gma04g00543 962 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Gma04g00543 962 Gene3D - 434 680 IPR036890 -
Gma04g00543 962 Gene3D - 356 433 - -
Gma04g00543 962 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Gma04g00543 962 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Gma04g00543 962 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Gma04g00543 962 CDD REC_hyHK_CKI1_RcsC-like 840 958 - -
Gma04g00543 962 Coils Coil 88 115 - -
Gma04g00543 962 Pfam His Kinase A (phospho-acceptor) domain 370 433 IPR003661 GO:0000155|GO:0007165
Gma04g00543 962 Coils Coil 178 205 - -
Gma04g00543 962 SUPERFAMILY PYP-like sensor domain (PAS domain) 213 330 IPR035965 -
Gma04g00543 962 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Gma04g00543 962 SUPERFAMILY CheY-like 838 958 IPR011006 -
Gma04g00543 962 Gene3D - 834 961 - -
Gma04g00543 962 MobiDBLite consensus disorder prediction 772 812 - -
Gma04g00543 962 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 450 674 IPR036890 -
Gma04g00543 962 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 960 - -
Gma04g00543 962 ProSiteProfiles Response regulatory domain profile. 839 962 IPR001789 GO:0000160
Gma04g00543 962 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 433 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00543 Gma-Chr4 4872149 4877237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00543 584 960 Histidine Kinase Gene Family AT5G10720 51.662 2.07e-115 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma04g00543 HATPase_c 1.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00543 - - gmx:100811117 1862.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00543 04 4872149 4877237 Gma06g00533 06 4627574 4634706 GST