Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00533 ATGCAACAACACGAAAAGCGTCGGATAAGGGGATGTGACCTCGTTCCGAGGGAGAAGTTTGAGAAGCTGGAAGGAGTGGTTCGGAAAATTTATAGTCAGATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCTATTTATCCTGAAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGGAAGCTGAGCTTGCTAAGGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGGTGCCTAATGAGTGGGCTCCTCCTGAAACTAAGCCATATACTCCAGGGGAAAATCTTCAAGACTGGCTCACTGATGCAAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTCTATGGAACGATGCCAGGCATTTAAAGCCTGATCCCGTTTATAAGCGAGCATTTGGACAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATACTTGGCCACTGTTCATAGACAGGGGGCAGCAGTCTGGGGAGGTGCTGCCAGTTTCAATAAACTTATGCGTTATTCGCATCCTCAGGCTTTCTTTGAGATTTATTCTGTAAAACTTATTGATTTTTCGCCTGGTGAGAAGTATTTGGTAACATATATTAGCCATGAACCAAGCAATCCCCGAGATGCCAATAGAGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGGGACTTAGGAAGTGCTGATGATTTTGCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGTCTGTTTTCAAATACTATTTAGTAAAGGTTGAAAATATAATGGATTTCTGCTGGTCTTCTACTGATCCAATTATTGCTCTTGTTGTTCCTGATATGGGAGGTGGTAACCAGCCTGCCAGGGTTAGTCTGATTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCGGTGACTGCAAGATCACATATACAGGCTTTGAGCTTTTCCGTATAAAAGAACGGGATATACCAATTGAAGTTTTGGAGCTTGAGAATAAGAATGATAAGATCATAGCGTTTGCTTGGGAGCCAAAGGGCCACAGGTTTGCAGTTATTCATGGTGATAACCCTAAGCCTAATGTCATTTACTCCATGCGTACTGGTCAGAACAGCCAAGTTTCAAAACTCACTACTCTGAAGGGCAAGCAAGCAAATGCTCTGTTTTGGTCACCTGCTGGTCGCTACATTGTACTAGCTGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTACAACGTTGATGAACTTAAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGAATGGTTTCAGTATGGTCTTTCAATGGCAAACATCTATATCGGATTCTGAAGGATCACTTATTTCAGTTCTTATGGAGACCAAGGCCGCCATCTTTCTTGACTCCTGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAGTACAGCATATACGAGGCAGAAGATCAAGATGTTTCGTTGCCGCTGAGTGAGCAGGAGCGTGAGAAGTGTAGGATGTTGAAAGAAGATTGGGACAAGTGGGTTAACGAATGGAAGCAGATCCACGAAGAGAGTTTACAGAGGCAAAAGCTCAGGGATGGAGAGGCTAGCGATGAAGAGGAAGAATATGAGGCAAAGGACATGGAGGTGGAGGAAGTGATGGATGTAACAGAAGAGGTCCTTCACCTTGAGTATGGTCATTGGTCAAGAGTGAGTTTTATAGCTGGACTACATTTTATTCACTTGTCCAGGTTTAGTTGGGCAGCTTACTTCGATTTCATCTTTCATTTGTTTCTTTTTTACGTGGAAGGAATTCCTTTTACTGTCAAATTTAACGTGAAAGACATTTTTGCTGTCTCCTTAGGGGAAAGTGTTCACTCATATACCTCGCTGCCTTCGAACTAA 1998 0.4354 MQQHEKRRIRGCDLVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPIYPETEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVSMFDDFDRFMKVPNEWAPPETKPYTPGENLQDWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFGQSFVQWSPLGTYLATVHRQGAAVWGGAASFNKLMRYSHPQAFFEIYSVKLIDFSPGEKYLVTYISHEPSNPRDANRVVINIFDVRTGKVMRDLGSADDFAVGGAGGVTGVSWSVFKYYLVKVENIMDFCWSSTDPIIALVVPDMGGGNQPARVSLIQIPSKEELRQKNLFSVGDCKITYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPNVIYSMRTGQNSQVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELKTMATAEHFMATDIEWDPTGRMVSVWSFNGKHLYRILKDHLFQFLWRPRPPSFLTPEKEEEIAKNLKKYSIYEAEDQDVSLPLSEQEREKCRMLKEDWDKWVNEWKQIHEESLQRQKLRDGEASDEEEEYEAKDMEVEEVMDVTEEVLHLEYGHWSRVSFIAGLHFIHLSRFSWAAYFDFIFHLFLFYVEGIPFTVKFNVKDIFAVSLGESVHSYTSLPSN 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00533 665 CDD RRM_eIF3B 9 87 IPR034363 -
Gma04g00533 665 PIRSF Transl_init_eIF3b 8 278 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma04g00533 665 PIRSF Transl_init_eIF3b 335 594 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma04g00533 665 PIRSF Transl_init_eIF3b 275 338 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma04g00533 665 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 81 IPR000504 GO:0003723
Gma04g00533 665 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 4 593 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma04g00533 665 Gene3D - 8 88 IPR012677 -
Gma04g00533 665 PANTHER BNACNNG51870D PROTEIN 14 276 - -
Gma04g00533 665 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 279 592 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma04g00533 665 Pfam Eukaryotic translation initiation factor eIF2A 335 486 IPR013979 -
Gma04g00533 665 SUPERFAMILY DPP6 N-terminal domain-like 162 480 - -
Gma04g00533 665 Gene3D - 280 501 IPR015943 GO:0005515
Gma04g00533 665 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 14 276 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma04g00533 665 PANTHER BNACNNG51870D PROTEIN 279 592 - -
Gma04g00533 665 SUPERFAMILY RNA-binding domain, RBD 24 84 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00533 Gma-Chr4 4755832 4761408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00533 14 593 Eukaryotic Initiation Factors Gene Family AT5G27640 65.544 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00533 K03253 - gmx:100817394 1015.76