Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00532 ATGTCTCCTGCTTCCTCCCCTTTGCAAGTGCCATCATCAACTACTCCTTTTGCTGGTCTTGTCATCTGCGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGATAGATTAGGTGGACAGTATAGCCCCAATTTGCATCCTCGATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGCCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAAGTGTGAGGTTGAGTGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAACACGCATTTGGAGGATTTTAGACTGCTTCCTGAGTATACAAATGCTGAAAATTCTTGTCTTCCTGCAAGAATCCTCCAAACCAAGCAAGCTATTAGTGTTGAAGAACTTCAAAGATTCACTGGGAGAGAGTCTATCAGAAATTTGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAGGCATTTCATCTGAATTGCGAAACAAGGTTATTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAGTTACCTCATTACACCTCTGTGGGTTCTCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCGCATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTGGAAGATATCCATAATGGCATTTCAGGAAAGGAAGTAATAAAGCAAAAAGTCCTTAACAATCTTCTGGATACTGAAAGTGAAGTCGGCTATGAAGAAAGACAACAAATTGTGAATTCTGCAAAAAATGGAGTCAGAAGTCGCCGTGGTCGCCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCCGAGTCGACTTCGGCTGCTTCCATTTATACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAACCATACTTCAATATTTTTTTATGCAAAAGGGGATGGCAAGGATTCGGAAGCTTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGTTGATATTTAAAAACCCTTTCCTTACCATACTATTCCCAATTGACCGATTTGCTGAGATGGGTCCTTCTTCAAGAACATTTTTCAGCCATAATGGTTTTAGGTGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAACATGTCAAGGGAAGAAATAGAAGCTGCAATTCATAGTGATTCAAGACACGCTGATAGGCTTCGATCAGTGTACTCTAGTAAGGAAACAGCAGAACATGGCTATGTACTGTTTAAAAGGGTCGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACTCCTCCAACGTTTATGAGCTATTACTTAGGGCCTAA 1518 0.4177 MSPASSPLQVPSSTTPFAGLVICVTGLSKEARNQVMEATDRLGGQYSPNLHPRCTHLVVQSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKSVRLSESHYRVKSYGDNNTHLEDFRLLPEYTNAENSCLPARILQTKQAISVEELQRFTGRESIRNLDSTLSGCSIYVDPGISSELRNKVIETASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSYLITPLWVLKTAKEKYVRRLVRMSVDLAKQVGLMLEDIHNGISGKEVIKQKVLNNLLDTESEVGYEERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISESTSAASIYTDSFSVEDPSENHTSIFFYAKGDGKDSEASFSNSTRPLTESEKSELIFKNPFLTILFPIDRFAEMGPSSRTFFSHNGFRCLQVLDHIHAFYQENMSREEIEAAIHSDSRHADRLRSVYSSKETAEHGYVLFKRVEFLGSRTSFEMLKRVTGDNSSNVYELLLRA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00532 505 SUPERFAMILY BRCT domain 13 105 IPR036420 -
Gma04g00532 505 Gene3D BRCT domain 15 106 IPR036420 -
Gma04g00532 505 ProSiteProfiles BRCT domain profile. 12 104 IPR001357 -
Gma04g00532 505 CDD BRCT_TopBP1_rpt2_like 16 94 - -
Gma04g00532 505 Pfam Family of unknown function (DUF6699) 398 489 IPR046522 -
Gma04g00532 505 Pfam twin BRCT domain 20 86 IPR001357 -
Gma04g00532 505 ProSiteProfiles BRCT domain profile. 158 236 IPR001357 -
Gma04g00532 505 SMART BRCT_7 14 94 IPR001357 -
Gma04g00532 505 SMART BRCT_7 160 236 IPR001357 -
Gma04g00532 505 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 6 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00532 Gma-Chr4 4743749 4749883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00532 9 104 Core DNA Replication Machinery Family AT1G77320 37.500 1.76e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00532 - - gmx:100807358 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00532 04 4743749 4749883 Gma04g00532 04 4743749 4749883 ECH
Gma04g00532 04 4743749 4749883 Gma06g00524 06 4440663 4446192 GST