Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00531 ATGAAttccaacattgattcaacagaccatagccaggatcaaagcagaaaacgaaacctacccgatgctgatgattctccggcgccgaatttccacattgattcatcagaccataaccaggaccaaagtaaaaaacgaaagcaacccaatgatgaagattctccATCGCTTGAATCGCCTTGTTCCAACATGAACCCCAGAAGGTATCAGATAGAGGTGTATGAAGTTGCAAGGAGAAGGAACACTATAGCTGTGTTGGATACAGGGTCAGGTAAGACCCTGATTGCTGTAATGCTTATGAAAGAGGTTGGTCAAGCCATCAAGACTAGTGGTGTAAAGAAGCTGATTATTTTCTTGGCTCCCACAGTTCATCTTGTCAATCAGGCATGTCACACACAATTCAAGAATATAAAATTTCTGACTGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACGTGGGAGAAGGAGATTAGTAACAATGATGTTCTGGTTATGACACCCCAGATTCTTTTGGATGCGTTAAGAAAAGCATTCCTGCGTATGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGAACAATTGGCAATCATCCTTATACAAAAATAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCTGTTGGTAAAAAAGGTGTTTCCTCTACTATGGATTGTGAGGATCAGATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGACAGAGATGGATAGGTGTGTCCCATCTGCTAAAGAGAGTTGTAGATATTATGACCAAGCACGATTTTCTGCTTTGAGTTTGAAACCAAAGATTGAAGCCTTGTCGTTCAAGTTTGATGCATTGTTATCAGAAAATCAAAGTAACTATAAGGATGTGGAAAATAAATTTAAGACACTTTCTCAGCGGATGTCCAATGAACTTGCAAAAATTTTACATTGCCTTGAAGATCTTGGGATCCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAGAATTTTTCCAAATCTGAAGGAGAGTGTGAAATTTACAGAAAAGGTTATCTTCAATGTATAACTTTTCTTGAAGAAGTAATCAAATTAATCGAAGAATCCCTCCATCTTGCTGATAAAAAGATTTTGGAGGTTGATTTTAATTATTCTCAGGCAGAAGATTTGGGATACATATCTCCCAAATTAATTGAACTTATTAAACTCTTTCAGTCATTTGGAGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACCGCAAAGGTGATCCAAAGATTCGCAAAGACAGTTCCCAATATTTCTCATTTCACAGTTTCCTATTTAACTGGTAACAATACATCGGTTGATGCTCTGGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGTGGAAGATCTAGGCAGGCAAACTCCCAATTTGTTGTGATGTTGGAGAGGCAACAAAGAGATCAACTCTTTGATATCATTAGGAGTGAGCGGTCCATGACTGATGCATCTATTTATAAAGAACATGAATCTAGTTTAAGGGCATGTATGGTGGGGAAAACAAATGCATACTATGTGGAATCCACTGGAGCATCTTTCACTTTAGATTCTAGTGTTAGTCTCATCCACCGATACTGTGGAACACTCCCTCGAGATAAGTACTCCTGTGTAAAGCCCAATTTTGAGTTTCTGTCTGTGGAAGGGGGTTATCAGTGTAAATTAATATTACCATCTAATTCAGCTTTCCAAACAATAATTGGTCCTTCTGGAAAAGATATGCGTTTGGCAAAGCATCTTGCATGTTTCGAAGCTTGTAAGAAGCTGCATCAAATGGGTGCCTTAAATGAACATTTGGTTCCATTAATTGAAGATTCTTCAGAAGATGACCATATTGTGAAAAATAAAGAATCAAGTTCTGGTGCAGGGACCACAAAAAGAAAGGAGTTACATGGAAAAGCTAACATTCATGCATTAAGTGGTGCATGGGGAGACAAACTCACTAGAGTCAAATTTAATGCGTATAAATTTGAATTCACATGTAATATTGTAAGTGAAATATACTCTGGGTTTGCTCTTTTGATTGAGTCAGAGCTTGATGAGGATGTGGGAAATGTAAATTTAGATCTTTATTTAGTCTCAAAGATTGTGAAAGCTTCCGTCTCTTCATGTGGGCAAGTTGATTTGGATGCTGAACAGATGATGAGAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGGAGACTGGTCTTGAAGTCCAAATCAGCAGGAGAAAGGGAATTTTTACTTCAGAAAGACACAAACTCATTGTGGAGCCCAAAACACTTGTATTTGCTTCTACCACTAGAGAAATTGAATGATATCTGTGAGGGATCTTTGCAAATTAATTGGTGTGGAATTAATTCTTGTGCTTCTGCTATCAAATTTTTAAGGAGGAAATTTTCTTTGGTCACTGGAGATTGTGATGATAACGGCACAATCACATCACCTCATGATACCAGTTCATCAGAGATGGAATGTGTAGGAGCAAACAAGATTCACTTTGCTAATTGTGTGGTTGATGCTGATAATATAAAAGACAGGGTAGTTTTGGCCATTCACACTGGGAAAATATATTGTATTATTGAGATCGACAGTAACCTATCTGCTGAAAGTCCTTTCTATGGAAACAATGAAAAATCAAAGGAAAGCATTACCTTCTCGGATTATTTCAGCAAAAGTTATGGAATTTCACTGAGACATCCTGGACAGCCTATGTTACGGTTGAAGCAAAGTCATAATCCACACAATCTTCTTTTCAACTTCTATGAGGAAGCAGATGCACGAGACAAGTCATCAAAAATTGGCCCTGCAGCCTCAAAATTGCCAGTGCATGTTCATATTCCTCCCGAGCTTCTATACATTCTTGATGTTAAAAGAGATGTGTTGAAATCACTGTACTTGCTGCCATCTCTGATGTACCGCATTGAATCTTTGATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTTCAACATACGTAGCTCACTGATTCTAGAATCACTTACAACTTTGAGATGTAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAGTATGTGGTGAGTTGTCACCTCTTTCTTAAATATCCTAAAAAACACGAAGGACAATTATCTGCCAGACGATCATCGGCTGTTTGTAACTCAACCCTACATAAACTGGGGACAGATCGCAAATTACAGGGATATATTCGAGACTCTGCTTTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACACCTTGTTTGTTGTGATTGTGGGTTGGAAACCCTTGAAGTGCCTTTAGATGCAAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTTTGCGACAGAGGTCACTGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGATGGTGGACTTTTTGCTTCACTTAATGTGATGAAATGGCTTGGGATTGGTGCTGAACTTGAACTATCATTGGTTGATGAAGCAATCACTGCTGCATCTCTGCGTACATGTTTGCCAAAAGAAAGTGAGATTGCAAGCCTTGAAAAGAAAATTGGGTATGAATTTTCGGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTAGGTGACTCGGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTGAAGGTCATTTCTGAATCAGATCCCAGATCACTTCCAAGTATTAGTGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATAGTTGGGGCTATACTAATTGATACCAAGCTCAGTCTTGACCAAGTGTGGAACGTTTTCTATTCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCGCTCGGTTATTTTGTAAAAGTAAAAGAAAATTGTGAAAAAGTGGGATCAGCAATGCATGTTGAGGTTAGTGTACAACTTCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGGCAAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTTATTTGTTGAAGGATCTTGAGAAGCAGGGAATTTCACATGGTAGTTTCATGTCCAAGGGAAAAAGAGATAATCCTGACCATGTCTATGGTTCATCTCATCTCAAAATGGATTCTAGTATTCTAATTGAAGAACATTCCTCAGAGCCAGCATCACATAAAAGGCACATATTGGATGAAACTAACTTAACTGCAATTAATTTATCAATTAATATGAAGAAGGGAGGACCGCGGACCACATTATATGAAGTATGTAAGAAATTACAGTGGCCAGTGCCTACATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAGGGGCTGCAAGGAAGCAAGGGACAGAACTGCTTTGTGTCGAAAATTACCTTGTGCATACCCAATTATGGTAATATAGAAAGCAAAGGAGAAGCTAGAAGTGATAAGAAGACCTCCTTTGACTCTGCTGCAGTTCAAATGCTTCTTGAGCTGCAAAGACTGGGAAAAGTTGAAATTGATCCTCTCCCTTCTAGTTAG 5031 0.3733 MNSNIDSTDHSQDQSRKRNLPDADDSPAPNFHIDSSDHNQDQSKKRKQPNDEDSPSLESPCSNMNPRRYQIEVYEVARRRNTIAVLDTGSGKTLIAVMLMKEVGQAIKTSGVKKLIIFLAPTVHLVNQACHTQFKNIKFLTDFQVEEYYGAKGVDTWTLKTWEKEISNNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRTIGNHPYTKIMKEFYHQANEKPKIFGMTASPVGKKGVSSTMDCEDQISELESILDSQRYTVEDRTEMDRCVPSAKESCRYYDQARFSALSLKPKIEALSFKFDALLSENQSNYKDVENKFKTLSQRMSNELAKILHCLEDLGILCAYEAVKICHENFSKSEGECEIYRKGYLQCITFLEEVIKLIEESLHLADKKILEVDFNYSQAEDLGYISPKLIELIKLFQSFGESSQVLCLIFVDRIITAKVIQRFAKTVPNISHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERQQRDQLFDIIRSERSMTDASIYKEHESSLRACMVGKTNAYYVESTGASFTLDSSVSLIHRYCGTLPRDKYSCVKPNFEFLSVEGGYQCKLILPSNSAFQTIIGPSGKDMRLAKHLACFEACKKLHQMGALNEHLVPLIEDSSEDDHIVKNKESSSGAGTTKRKELHGKANIHALSGAWGDKLTRVKFNAYKFEFTCNIVSEIYSGFALLIESELDEDVGNVNLDLYLVSKIVKASVSSCGQVDLDAEQMMRAKCFHELFFNGLFGRLVLKSKSAGEREFLLQKDTNSLWSPKHLYLLLPLEKLNDICEGSLQINWCGINSCASAIKFLRRKFSLVTGDCDDNGTITSPHDTSSSEMECVGANKIHFANCVVDADNIKDRVVLAIHTGKIYCIIEIDSNLSAESPFYGNNEKSKESITFSDYFSKSYGISLRHPGQPMLRLKQSHNPHNLLFNFYEEADARDKSSKIGPAASKLPVHVHIPPELLYILDVKRDVLKSLYLLPSLMYRIESLMLSSQLREEIDGQTSKFNIRSSLILESLTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSSAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHLVCCDCGLETLEVPLDAKFHTEDPKVVVGKFCDRGHCWMCSKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGAELELSLVDEAITAASLRTCLPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLLSQISEYVKVISESDPRSLPSISAPKALGDVVESIVGAILIDTKLSLDQVWNVFYSLLSPIVTPDKLELPPFRELNELCDSLGYFVKVKENCEKVGSAMHVEVSVQLPNALLVREGKGANKKTAKGEAAFYLLKDLEKQGISHGSFMSKGKRDNPDHVYGSSHLKMDSSILIEEHSSEPASHKRHILDETNLTAINLSINMKKGGPRTTLYEVCKKLQWPVPTFDSTEYKDRSLFESCEGLQGSKGQNCFVSKITLCIPNYGNIESKGEARSDKKTSFDSAAVQMLLELQRLGKVEIDPLPSS 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00531 1676 Gene3D - 1443 1512 - -
Gma04g00531 1676 Gene3D Ribonuclease III domain 1062 1244 IPR036389 GO:0004525|GO:0006396
Gma04g00531 1676 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 602 692 IPR005034 GO:0016891
Gma04g00531 1676 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1488 1511 IPR014720 -
Gma04g00531 1676 SUPERFAMILY RNase III domain-like 1273 1437 IPR036389 GO:0004525|GO:0006396
Gma04g00531 1676 SUPERFAMILY RNase III domain-like 1074 1251 IPR036389 GO:0004525|GO:0006396
Gma04g00531 1676 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 45 1667 - -
Gma04g00531 1676 SMART helicmild6 451 538 IPR001650 -
Gma04g00531 1676 Gene3D - 409 573 IPR027417 -
Gma04g00531 1676 Pfam Ribonuclease III domain 1098 1233 IPR000999 GO:0004525|GO:0006396
Gma04g00531 1676 Pfam Ribonuclease III domain 1310 1416 IPR000999 GO:0004525|GO:0006396
Gma04g00531 1676 Pfam Dicer dimerisation domain 602 687 - -
Gma04g00531 1676 CDD DEXHc_dicer 64 266 - -
Gma04g00531 1676 SMART ultradead3 62 265 IPR014001 -
Gma04g00531 1676 CDD RIBOc 1290 1438 IPR000999 GO:0004525|GO:0006396
Gma04g00531 1676 ProSiteProfiles PAZ domain profile. 921 1036 IPR003100 GO:0005515
Gma04g00531 1676 PANTHER DICER-RELATED 45 1667 - -
Gma04g00531 1676 SMART riboneu5 1289 1440 IPR000999 GO:0004525|GO:0006396
Gma04g00531 1676 SMART riboneu5 1080 1253 IPR000999 GO:0004525|GO:0006396
Gma04g00531 1676 ProSitePatterns Ribonuclease III family signature. 1310 1318 IPR000999 GO:0004525|GO:0006396
Gma04g00531 1676 ProSiteProfiles Ribonuclease III family domain profile. 1061 1233 IPR000999 GO:0004525|GO:0006396
Gma04g00531 1676 ProSiteProfiles Ribonuclease III family domain profile. 1274 1417 IPR000999 GO:0004525|GO:0006396
Gma04g00531 1676 CDD RIBOc 1080 1244 IPR000999 GO:0004525|GO:0006396
Gma04g00531 1676 CDD SF2_C_dicer 414 546 - -
Gma04g00531 1676 Coils Coil 309 336 - -
Gma04g00531 1676 Pfam PAZ domain 922 1057 IPR003100 GO:0005515
Gma04g00531 1676 Gene3D paz domain 909 1034 - -
Gma04g00531 1676 SUPERFAMILY PAZ domain 922 1036 IPR036085 GO:0005515
Gma04g00531 1676 SMART PAZ_2_a_3 901 1060 IPR003100 GO:0005515
Gma04g00531 1676 Gene3D Dicer dimerisation domain 597 695 IPR038248 -
Gma04g00531 1676 Gene3D Ribonuclease III domain 1270 1440 IPR036389 GO:0004525|GO:0006396
Gma04g00531 1676 Pfam Type III restriction enzyme, res subunit 65 234 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gma04g00531 1676 Gene3D - 61 302 IPR027417 -
Gma04g00531 1676 MobiDBLite consensus disorder prediction 1 64 - -
Gma04g00531 1676 Gene3D - 1585 1664 - -
Gma04g00531 1676 MobiDBLite consensus disorder prediction 37 53 - -
Gma04g00531 1676 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 418 576 IPR001650 -
Gma04g00531 1676 Pfam Helicase conserved C-terminal domain 431 535 IPR001650 -
Gma04g00531 1676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 552 IPR027417 -
Gma04g00531 1676 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 252 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00531 Gma-Chr4 4722892 4742602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00531 462 535 Eukaryotic Initiation Factors Gene Family AT3G19760 39.189 4.04e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00531 K11592 - gmx:100806831 3279.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00531 04 4722892 4742602 Gma04g00531 04 4722892 4742602 ECH
Gma04g00531 04 4722892 4742602 Gma06g00522 06 4432738 4438692 ECH
Gma17g00424 17 3424398 3433186 Gma04g00531 04 4722892 4742602 ECH
Gma13g00948 13 23631000 23641077 Gma04g00531 04 4722892 4742602 ECH
Gma15g01706 15 18293998 18309836 Gma04g00531 04 4722892 4742602 ECH
Gma09g00677 09 7974289 7990521 Gma04g00531 04 4722892 4742602 ECH
Gma04g00531 04 4722892 4742602 Gma06g00522 06 4432738 4438692 GST