Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00519 ATGGCTACTCATCTCTTCAGACTTTCTCTCTCCTCGCAACCCAAGCTCTGCTTCAATTACACGCCTAATCATGCACTCCACTTCATTTCTCCGCTGCCGGCAAAACGACGTGGCAGCCGCTGCCGCCACCGTCGTGAAATTCTCCGGTCACCGTTCGCCGTTTCGAACTCTTTCGGGACCGAGATTGGCTCGCCGGATTTGGCTCTTCTCCAAGACCGGAGAGAGGCAAAAGACTCGCCGGTTCTACTCGACGTCACCGGAATGATGTGCGGCGCGTGCATCTCCCGGGTCATGCTTCTTGGTTTTGTGCTTCTGGGACGTTCTCTGGAAGAAAAGGCAAGGATTCAGGCATCTAGCGATATGAATGAACTGCTTTCACTGATATCTACTCAGTCAAGACTTGTGATTACTTCAACAGAAGGTTCACCTTCTACTGACACTGTGCTTTCCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGTGATTCTGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAATGGTCATTTCAGGAAGAAGTGTTGTAGATGAATCCATGCTTACAGGGGAATCACTTCCTGTATTTAAGGAGAAAGGCCTCACAGTTTCAGAAGGGACTATAAATTGGGACGGCCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACTATGATATCAAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACATTTGCATTTTGGTATTCTGTTGGATCACACATATTTCCTGAGGTTTTGCTCAACGATATTGCGGGCCCAGAAGGAGATCCTTTGCTGTTGAGTTTGAAACTATCTGTAGATGTTGTTTCTTGTCCATGTGCATTGGGTCTTGCTACGCCCACAGCAATCTTAGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTGGAATACATTATATTGCTCTAGACAAGACAGGAACCCTGACCAAAGGAAAACCAGTTGTGTCGGCCATAAGCTCTATCCTGTATGGAGAATCTGAAATTCTTCGGCTTGCTGCTGCAGTGGAGAAAACTGCATCTCACCCAATAGCAAAAGCTATTGTCAATAAAGCTGAGTCATTAGAGTTGATCTTTCCTGTCACAAAGGGACAGTTAGTTGAACCAGGAGAAGGCATCATTGGTGCTGTTGCCATATCTGACACTGTGCGTGAAGATGCTGAATCTACTATAACGAGGCTCAAGCAGAAGGGGATTAAAACAGTCCTCTTGTCAGGAGATAGGGAAGAGGCAGTTGCAACAGTAGCAGATACAGTTGGAATTGAAACTGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTGGATTTATTTCCTCTCTGAAAGCTGTCGGTCATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTGGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGATAATGCTGCTTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCGCTAGATCTAGCACAGGCAACAATGGGAAAAGTGTACCAAAATTTGTCTTGGGCAGTCGCATATAATGTCGTTGCCATTCCCATTGCTGCTGGTGTGTTACTTCCCCATTTTGACTTCGCCATGACACCATCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAAATCTCTAGAAAGGTTGGGCCAACTCTAGAAAGCATATCTTCCCATTCAAACACAGATATGCTTAATGTAAAATAA 1944 0.4573 MATHLFRLSLSSQPKLCFNYTPNHALHFISPLPAKRRGSRCRHRREILRSPFAVSNSFGTEIGSPDLALLQDRREAKDSPVLLDVTGMMCGACISRVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLSSDAICVEVPTDDIRVGDSVLVLPGETIPIDGMVISGRSVVDESMLTGESLPVFKEKGLTVSEGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYSVGSHIFPEVLLNDIAGPEGDPLLLSLKLSVDVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGIHYIALDKTGTLTKGKPVVSAISSILYGESEILRLAAAVEKTASHPIAKAIVNKAESLELIFPVTKGQLVEPGEGIIGAVAISDTVREDAESTITRLKQKGIKTVLLSGDREEAVATVADTVGIETDFVKASLSPQQKSGFISSLKAVGHHVAMVGDGINDAPSLAVADVGIALQNEAQDNAASDAASIILLGNKISQVVDALDLAQATMGKVYQNLSWAVAYNVVAIPIAAGVLLPHFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQISRKVGPTLESISSHSNTDMLNVK 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00519 647 SUPERFAMILY Calcium ATPase, transduction domain A 152 241 IPR008250 -
Gma04g00519 647 Pfam haloacid dehalogenase-like hydrolase 354 412 - -
Gma04g00519 647 Gene3D - 114 245 - -
Gma04g00519 647 Pfam haloacid dehalogenase-like hydrolase 429 520 - -
Gma04g00519 647 Pfam E1-E2 ATPase 143 336 - -
Gma04g00519 647 Gene3D - 427 576 IPR023214 -
Gma04g00519 647 Gene3D - 347 366 IPR023214 -
Gma04g00519 647 PRINTS P-type cation-transporting ATPase superfamily signature 451 461 - -
Gma04g00519 647 PRINTS P-type cation-transporting ATPase superfamily signature 506 525 - -
Gma04g00519 647 PRINTS P-type cation-transporting ATPase superfamily signature 191 205 - -
Gma04g00519 647 PRINTS P-type cation-transporting ATPase superfamily signature 429 440 - -
Gma04g00519 647 SUPERFAMILY HAD-like 354 614 IPR036412 -
Gma04g00519 647 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 148 416 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma04g00519 647 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 425 595 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma04g00519 647 PANTHER ATP7, ISOFORM B 97 619 - -
Gma04g00519 647 ProSitePatterns E1-E2 ATPases phosphorylation site. 358 364 IPR018303 -
Gma04g00519 647 Gene3D - 367 426 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00519 Gma-Chr4 4606157 4613979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00519 98 618 Primary Pumps ATPases AT1G63440 36.833 1.50e-102 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00519 K17686 - gmx:100127402 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00519 04 4606157 4613979 Gma04g00519 04 4606157 4613979 ECH
Gma04g00519 04 4606157 4613979 Gma06g00507 06 4310740 4319134 GST