Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00505 ATGGAGATGGAGGCAGGAGGAGCTCAATCTCAACGCTACAACTACAACTACGACTACAATCCCTGCTCTGTTATCACCAGTGTGATCCAGCTTTGTGATACAAAGATGGAAAATCTTTTCCTTTATGGATTTCCTAGGGAACTGTGGGAAGTCAATGTGCCTCCAGACCTTCTAGTGCCAACATTGGGTATTAACTTTGACAGAGACGGGAAGCAAAATAAGGACTGGCTATCCTTGGTTGCTATGCACAGTGATGCATGGAAGCAACTGTTTGATGTGATAAATGATCTTCCAACAATAAATGAGGTTGTTACAGGGATGACCAAGAAGCAAGGAAAGGAAAAGTCATCAGTTCCTAATCATAGCAAACCTAAATCAAACTCTAAGAGGGGTTCTAAACCTCAAGGGAAGTATTCGAAAGCGATGCAATCAAAGGATGAAGATGAAGATGATTTAGAAGTGGACGATGAAGAGGAGCATGGAGAAACACTTTGTGGGACATGTGGATTGAACTATGCAGGTGAAGCTTCTGAGTTCTCGATTTGCTGTGACAATTGTGACAAGTGGTTTCATGGAAAATGTGTGAAGATTACTCCTGCTAGGGTTGAGGGTATCAAGCGGTACAAATGTCCATCTTGGAGCAGCAAGAGAGCTCGACCTTGA 663 0.4299 MEMEAGGAQSQRYNYNYDYNPCSVITSVIQLCDTKMENLFLYGFPRELWEVNVPPDLLVPTLGINFDRDGKQNKDWLSLVAMHSDAWKQLFDVINDLPTINEVVTGMTKKQGKEKSSVPNHSKPKSNSKRGSKPQGKYSKAMQSKDEDEDDLEVDDEEEHGETLCGTCGLNYAGEASEFSICCDNCDKWFHGKCVKITPARVEGIKRYKCPSWSSKRARP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00505 220 Pfam Alfin 26 91 IPR021998 GO:0006355|GO:0042393
Gma04g00505 220 SMART PHD_3 164 214 IPR001965 -
Gma04g00505 220 MobiDBLite consensus disorder prediction 121 139 - -
Gma04g00505 220 Pfam PHD-finger 165 212 IPR019787 -
Gma04g00505 220 MobiDBLite consensus disorder prediction 107 157 - -
Gma04g00505 220 SUPERFAMILY FYVE/PHD zinc finger 137 213 IPR011011 -
Gma04g00505 220 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 27 220 - -
Gma04g00505 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 214 IPR013083 -
Gma04g00505 220 PANTHER CPG BINDING PROTEIN 27 220 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00505 Gma-Chr4 4499779 4501455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00505 25 219 Alfin-like Transcription Factor Family AT3G42790 53.425 8.45e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma04g00505 Alfin 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00505 - - gmx:100801524 432.95