Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00481 ATGAAGGGAGTTACAGTGAAAGTTGAAGAAACAATGGCGTATGCTAATGCTGCTTCAACTAGCCCAACAACATCTTCAAACCTCTCCCCGCAACCCATGGAAGGGTTGCACGAGGTGGGTCCCCCTCCGTTTCTCACCAAAACCTTCGACGTGGTGGAAGACCCATCCACCAACGACATCGTTTCGTGGAGCAGATCCCGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCTACCACCATCCTGCCTCGCTACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACGGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTTTTGGCGGGGCAGAGGCAATTGTTGAAGACGATAAAGAGGAGGAGGCACGTGACAGTGACACAGACACAGTCACACGAGGGAGGAAGTGGGGCTTGTGTTGAATTGGGGGAGTTTGGGTTGGAAGGTGAGATGGAGAGGTTGAGGAGAGACAGGACAGTGTTGATGGCTGAAATTGTGAGGTTGAGACAACAACAGCACAACTCGAGGGAGCAATTGTTGTCCATGGAGACTAGGTTGCAAGCCACTGAGAAGAAACATCAACAGATGATGAATTTTCTGGCTAAAGCACTCAACAACCAGGCTTTTATTCAGCAGTTTCTTCAAAGGAATGCTCAGAACAAAGAGTTGCAAGGTGCGAGAAGAAAGAGGAGACTAACTGCTACCCCAAGTGTGGAGAATTTGCAGCAAGATCATTTCGCTTTGTCAATTGAAGAAGGATCGGCTACTATTGAGTCACAGATGGAGTCTTTTTTCTCAGCTGCGTGTAATGATCCGTTAGAATCAAACAGTGAACTCAAAGACCCAATATTGAGTTCAGTTCCAGTTGCAAGTGGGAGTAATTTGGGGGAGGTGAGTGATTCTGTTTGGGAGGACTTGCTGAACCAAGACTTGGTTGCTGGGGACCCTGAAGAGGAAGTTGTGATTGGTGATTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGATTGCGGATGCTGATGAGTGGAGTGAGGATTTGCAGAACCTTGTGGATCACATGGGTTATCTTGGGTCCAAACCGTAG 1119 0.4736 MKGVTVKVEETMAYANAASTSPTTSSNLSPQPMEGLHEVGPPPFLTKTFDVVEDPSTNDIVSWSRSRNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLAGQRQLLKTIKRRRHVTVTQTQSHEGGSGACVELGEFGLEGEMERLRRDRTVLMAEIVRLRQQQHNSREQLLSMETRLQATEKKHQQMMNFLAKALNNQAFIQQFLQRNAQNKELQGARRKRRLTATPSVENLQQDHFALSIEEGSATIESQMESFFSAACNDPLESNSELKDPILSSVPVASGSNLGEVSDSVWEDLLNQDLVAGDPEEEVVIGDFSQVDVPVEDLIADADEWSEDLQNLVDHMGYLGSKP 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00481 372 Gene3D - 37 134 IPR036388 -
Gma04g00481 372 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00481 372 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 323 IPR027725 -
Gma04g00481 372 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00481 372 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00481 372 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00481 372 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00481 372 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Gma04g00481 372 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00481 372 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 17 323 - -
Gma04g00481 372 Coils Coil 344 364 - -
Gma04g00481 372 Coils Coil 163 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00481 Gma-Chr4 4285701 4287612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00481 30 372 HSF AT2G26150 52.601 7.36e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma04g00481 HSF_DNA-bind 3.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00481 K09419 - gmx:100794605 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02178 17 39429823 39432794 Gma04g00481 04 4285701 4287612 PCT
Gma14g00877 14 9531460 9534352 Gma04g00481 04 4285701 4287612 PCT
Gma04g00481 04 4285701 4287612 Gma17g02178 17 39429823 39432794 PCT
Gma04g00481 04 4285701 4287612 Gma14g00877 14 9531460 9534352 PCT