Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00475 ATGGCTTTGATGGAAGAGAATGCTTCCTCCACCGAAGCTCTCACCCGAAAGCTGGACGAGATTCTGACCGAGACGGAGAACGATGTGGGCCAATTCTCTTTCGAAGAAGAAGCGGTTGAAAAGTTCATGCAAGAGCTTTACAAAGAGATCATCGCATCCCCACCAACGCCGTCAGAACCACCCTCATCCTCAAATGTGCTGCAGGTGCAAAATGACTCCATTGTTGCTCAAGATGAAGGGGATTTCGACGACGATGAGTGGCTCGCTAGGGTCCTTAGTTCTGGTCAGGCTCAGgaagaAACATTAGATGGAAGCAGTCACAAGGGCAAGGAACTATCAAATGACAGAGGCCAAGGTCAAAATTTTCAAGGTAAAGGCAATCAAAATCATACAAGAGATGGGAAGCTTGTATTTCATATTGGACCATCAAACAACAACAACCAAGTGTGCAATTCATCCTCCGTTAAACTTCAACCTAAGCCCGTTAAGGCAGATTCAAGCAGCGAGTGTGGCCACCATAACGTTTCCTTGTACAAAATAGAGGACGAAGAGAACAAAAGAGATCATGATTATGAAAAATGGATGTCTTCAACTGCGAGGTTAACGAGAAAAATGATGAGGCTACCTAGCACTAGCAGCGATCTGGCCACAAAGAAAGCATTGAATAATATTACAAGGGTTTGTGCGGATTGCAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGCGGCATTCGACAGAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGTAAATGGTTTTGCTCCTTCCGTGAATTCATCTTCTACAAAGATCAGAGTGCATCACAAGGAAAAGAAGTCTCGTACAAACCATTTTGCACGGTTCAGGCTTAAGTGCAAGTTGGCAACTACTAGTACTGCTGAAGGAACATCTCAGCAGGAGAACGTGAAGATTGATTTGAACGATTTTGGTTTGAGTTTGAGGGATAGTTCGGCTTTGAAGCAGCAAGTGTTTCCAATAATGGATGAAGTAGCTCAGGCAGCGATGCTTCTCATGGATTTATCTTGCGGCTTTGTTTACTGTTAA 1098 0.4472 MALMEENASSTEALTRKLDEILTETENDVGQFSFEEEAVEKFMQELYKEIIASPPTPSEPPSSSNVLQVQNDSIVAQDEGDFDDDEWLARVLSSGQAQEETLDGSSHKGKELSNDRGQGQNFQGKGNQNHTRDGKLVFHIGPSNNNNQVCNSSSVKLQPKPVKADSSSECGHHNVSLYKIEDEENKRDHDYEKWMSSTARLTRKMMRLPSTSSDLATKKALNNITRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAVNGFAPSVNSSSTKIRVHHKEKKSRTNHFARFRLKCKLATTSTAEGTSQQENVKIDLNDFGLSLRDSSALKQQVFPIMDEVAQAAMLLMDLSCGFVYC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00475 365 MobiDBLite consensus disorder prediction 95 130 - -
Gma04g00475 365 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Gma04g00475 365 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 262 - -
Gma04g00475 365 Gene3D - 223 295 IPR013088 GO:0006355|GO:0008270
Gma04g00475 365 SMART GATA_3 222 273 IPR000679 GO:0006355|GO:0043565
Gma04g00475 365 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 86 364 - -
Gma04g00475 365 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Gma04g00475 365 CDD ZnF_GATA 227 264 IPR000679 GO:0006355|GO:0043565
Gma04g00475 365 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 86 364 - -
Gma04g00475 365 MobiDBLite consensus disorder prediction 115 130 - -
Gma04g00475 365 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00475 Gma-Chr4 4229132 4236804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00475 193 364 C2C2-Gata Transcription Factor Family AT4G26150 38.095 7.06e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma04g00475 GATA 6.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00475 - - gmx:102659929 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00475 04 4229132 4236804 Gma04g00475 04 4229132 4236804 ECH
Gma17g02188 17 39559592 39562353 Gma04g00475 04 4229132 4236804 PCT
Gma14g00860 14 9234483 9237513 Gma04g00475 04 4229132 4236804 PCT
Gma04g00475 04 4229132 4236804 Gma17g02188 17 39559592 39562353 PCT
Gma04g00475 04 4229132 4236804 Gma14g00860 14 9234483 9237513 PCT