Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00454 ATGGAGGAATACACCAATAATCACCTGAGCCAAAACACAAGTCCAAGGGCAAATTTGTTGTATTCTTTGGCTGGTGGTTCAAGCGTAGGAAACCGCCACCACCAACTAATTCCATTTAACACCTTTCATCTTCAAACGGGTAGATCGGATCACTGTTTTCAACCGGATCAAGCACCACACCCTAGTGTGAAAACCGAGTCCAACAATTCCCATCTTCACTATCCTCTAATGAGATCAAATCTTCACCACATGCTGCATCCTCAGCAAGGAGGGAGCCAGAGCTCTAACGAACTTGAAGCCATAAAAGCCAAAATCATTGACCATCCTCACTACTCAAATCTTTTACAAGTTTACATGGATTGCCAAAAGGTAGGAGCTCCGCCAGAAGTGGCGGCGCGTTTTGCTACGGTTAAAGAGAATTTTGAGGCACGGCAGCGATCTTTGGTTAGGTCAATGGAAACTTGCAAGGACCCAGAACTTGATCAATTCATGGAAGCTTACTATGACATGCTAGTGAAGTATCGAGAGGAATTAACGAGGCCTATAGAAGAGGCTAAGGATTTCATGCAGAGGATAGAATCTCAGCTGAACACGCTTTGCAATGGAACCGTGCGGATCTTCTCTGCAGATGATAAGTGGGAAAACATTGGTTCATCATCGGAAGAGGATAAAGACAACAGTGGTCGAGAAACAGAATTGATCGAGATTGATCCCCAAGCGGAAGACCGTGAACTCAAAAGCCACTTGCTCAAGAAGTACAGTGGCTACTTAGGTACCCTTAAGAAAGAACTTTCTAAGAAAAAGAAAAAAGGAAAACTGCCTAAAGATGCTAGGCAAAAGCTACTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCGCTGGCTGAAGCAACTGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAACGGCACTGGAAACCATCGGAAGACATGCAATTTATGGTTATGGATGGCTTGCATGCGCAGAATGCAACTCTCTATATGGATGGCCACTACATGGCTAATGACCATTACCGTTTATGGCCATAA 1089 0.438 MEEYTNNHLSQNTSPRANLLYSLAGGSSVGNRHHQLIPFNTFHLQTGRSDHCFQPDQAPHPSVKTESNNSHLHYPLMRSNLHHMLHPQQGGSQSSNELEAIKAKIIDHPHYSNLLQVYMDCQKVGAPPEVAARFATVKENFEARQRSLVRSMETCKDPELDQFMEAYYDMLVKYREELTRPIEEAKDFMQRIESQLNTLCNGTVRIFSADDKWENIGSSSEEDKDNSGRETELIEIDPQAEDRELKSHLLKKYSGYLGTLKKELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAEATGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHAQNATLYMDGHYMANDHYRLWP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00454 362 SMART KNOX1_2 99 143 IPR005540 GO:0003677|GO:0005634
Gma04g00454 362 SMART KNOX2_2 150 201 IPR005541 GO:0003677|GO:0005634
Gma04g00454 362 Pfam KNOX1 domain 100 141 IPR005540 GO:0003677|GO:0005634
Gma04g00454 362 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 354 - -
Gma04g00454 362 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 24 354 - -
Gma04g00454 362 CDD homeodomain 276 328 IPR001356 GO:0003677
Gma04g00454 362 Gene3D - 269 331 - -
Gma04g00454 362 SMART ELK_2 244 265 IPR005539 GO:0003677
Gma04g00454 362 Pfam Homeobox KN domain 284 323 IPR008422 GO:0003677|GO:0006355
Gma04g00454 362 ProSitePatterns 'Homeobox' domain signature. 302 325 IPR017970 GO:0000981|GO:0006355
Gma04g00454 362 ProSiteProfiles 'Homeobox' domain profile. 264 327 IPR001356 GO:0003677
Gma04g00454 362 SMART HOX_1 266 331 IPR001356 GO:0003677
Gma04g00454 362 ProSiteProfiles ELK domain profile. 244 264 IPR005539 GO:0003677
Gma04g00454 362 Pfam KNOX2 domain 154 200 IPR005541 GO:0003677|GO:0005634
Gma04g00454 362 SUPERFAMILY Homeodomain-like 265 338 IPR009057 -
Gma04g00454 362 Pfam ELK domain 244 265 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00454 Gma-Chr4 4075760 4080650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00454 48 362 Homeobox Transcription Factor Family AT4G08150 66.144 8.76e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma04g00454 KNOX2 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00454 - - gmx:100798133 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00454 04 4075760 4080650 Gma04g00454 04 4075760 4080650 ECH